Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19990 92 / 8e-22 unknown protein AT5G11600 72 / 1e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002800 [exp] 73 / 2e-15 AT5G11600 155 / 3e-47 unknown protein Lus10001603 [exp] 72 / 4e-15 AT5G11600 158 / 2e-48 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G239600 [exp] 112 / 5e-29 AT1G19990 92 / 6e-22 unknown protein Potri.006G238800 [exp] 80 / 1e-17 AT5G11600 137 / 2e-40 unknown protein Potri.018G043800 [exp] 79 / 1e-17 AT5G11600 110 / 6e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033141 pacid=23178025 polypeptide=Lus10033141 locus=Lus10033141.g ID=Lus10033141.BGIv1.0 annot-version=v1.0 ATGCCGTCGGAGGATTCGAAGCCGGTGAAGAATGAAATGGCGGATGACGATGACTTAGACGACAGGAGTTTGAGCTCCATTATGCAGGCTCGGCGAAAGA ATCCGACGAATGCCGGTTCCATAACCCCGAAATCTCGCCCTAAATTGGCGAAATCTGAGAAGGAAGAGGATGATTGTGACAAAGTTATCAAGCCAAAGGG TTCTTCTCAGCCCAAGTCCAAGATAACCAAAGTGAAGAAGGATGATGTCGACGATGATGAAGACGAGAAGCCCATCTCCAAAAGGAACTCTGCCTCGAAA ACAGATAAAAAGGAGCTGAACAACAGGAAGACTAAGAAGAGTGAAGAAGACAAGGCTAAGGGAAGCGCGGAAGCTGAGCAGAATGGGAAGAAAAAGGAGA AGAAGGTTTATGATTTGCCAGGCCAAAGGCGGGATCCTCCCGAAGAGAGAGACCCTCTAAGGATATTCTATGAAACTCTGTATAAGCAGGTTCCTAACAG TGAAATGGCACAACTCTGGATGATGGAATCCGGATTGCTCCCTAAAGACTTGGCGCAAAAGGTGTATGATAACAAACTCAAGAAAAGGAATCACAAGCTC TCATCTCCAATGAAAAGAGAGACTCCCACAACAAAGAAGAGTAATGGGTCAACAGCTACAAAGAAGAAGCCATCCCCAGCATCCTCAGCGAAAAGCAAGA TAGTTCCATCCAAGGCCGCCCCAAAAGAATCTAAGAAGCGCAAGGCTAACAGTGACTCCGACAATGATTCAGACGACGATTTTGTACTGAGTGCTGTCTC AAAGAAACAGAGAGCATCTTGA
AA sequence Show only first row Show all	>Lus10033141 pacid=23178025 polypeptide=Lus10033141 locus=Lus10033141.g ID=Lus10033141.BGIv1.0 annot-version=v1.0 MPSEDSKPVKNEMADDDDLDDRSLSSIMQARRKNPTNAGSITPKSRPKLAKSEKEEDDCDKVIKPKGSSQPKSKITKVKKDDVDDDEDEKPISKRNSASK TDKKELNNRKTKKSEEDKAKGSAEAEQNGKKKEKKVYDLPGQRRDPPEERDPLRIFYETLYKQVPNSEMAQLWMMESGLLPKDLAQKVYDNKLKKRNHKL SSPMKRETPTTKKSNGSTATKKKPSPASSAKSKIVPSKAAPKESKKRKANSDSDNDSDDDFVLSAVSKKQRAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19990			unknown protein		Lus10033141 [exp]	0	1
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	1.4	0.9435
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10027545 [exp]	2.8	0.9335
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	3.2	0.9461
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10034199 [exp]	3.5	0.9304
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Lus10031147 [exp]	4.7	0.9169
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	4.9	0.9340
AT3G16980		NRPE9A, NRPD9A,...	RNA polymerases M/15 Kd subuni...		Lus10016880 [exp]	5.3	0.9127
AT1G27435			unknown protein		Lus10035173 [exp]	7.2	0.9021
AT5G55140			ribosomal protein L30 family p...		Lus10011966 [exp]	7.5	0.8809
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	7.9	0.9288

Compare expression of checked genes

Lus10033141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.