Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34860 928 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT4G09510 865 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G22650 850 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G35580 835 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT1G72000 826 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1) AT5G22510 605 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT1G56560 584 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G06500 571 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT3G05820 561 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034525 [exp] 1120 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10042390 [exp] 921 / 0 AT4G34860 982 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10026284 [exp] 917 / 0 AT4G34860 979 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10014824 [exp] 884 / 0 AT4G09510 987 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10006078 [exp] 882 / 0 AT4G09510 1001 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10016938 [exp] 882 / 0 AT4G09510 985 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10009441 [exp] 717 / 0 AT4G09510 831 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10043375 [exp] 608 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 607 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G167500 [exp] 932 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.005G239400 [exp] 917 / 0 AT4G34860 927 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.009G129000 [exp] 911 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.019G082000 [exp] 880 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.013G110800 [exp] 877 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.002G173600 [exp] 735 / 0 AT4G09510 741 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.004G186500 [exp] 606 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G101500 [exp] 603 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.008G024100 [exp] 601 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 599 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10033144 pacid=23178046 polypeptide=Lus10033144 locus=Lus10033144.g ID=Lus10033144.BGIv1.0 annot-version=v1.0 ATGGCGCCGATATTGGTGGATTTGTCTCAGAACGGAACTGCGGAATATTCTGACGACGATTCCGATGACATTCTCAAGTTGTTGGATACAACGAAACCCA TCAAGGTTGAAAGACCCAAGTCGTTTGGTGAAAGATCGTATAATGAACTGTCGGCGGCGACGGCTGTGTCGCCTCGTCACTACAGAAACTACGAAGCCAC CTCTCGAGTTGACCACATCGACTATGTCTATTCTCCTGGAAGATGGTCCGGTTTCAATTCTCCCAGGTCTAGCATCCACTTCGAATCCAATCCAATCGTG GCTGAAGCCTGGGATTTGTTGCGCCGATCTTTAGTTCACTTCCGTGGCCAGCCCGTTGGAACCATCGCCGCTTTGGACCATTCCGATGAAAAACTCAACT ACGATCAGGTGTTTGTGAGGGATTTTGTACCAAGTGGATTGGCGTTCTTGATGAACGGGGAATACGACGTTGTGAAGAACTTTCTACTGAAGACGCTACA CCTCCAATCGTGGGAGAAAACGGTGGATCATTTCCAGCTAGGAGAAGGAGTTATGCCTGCTAGCTTCAAGGTCCTACACAAACCTGAGAGGAACATCGAG ACATTGATCGCCGACTTCGGGGAGACAGCAATCGGAAGAGTAGCGCCCGTTGATTCAGGGTTTTGGTGGATCATTCTACTCCGTGCTTATACCAAATCCA CAGGAGATTCTTCTCTCGCCGAAATGCCCAGCTGCCAGAGAGGAATGCGTCTCATCCTCACCCTGTGTCTCTCCGAAGGATTCGACACTTTCCCAACTCT ACTCTGCGCCGATGGTTGCTGCATGATCGACCGTAGAATGGGGGTGTATGGCTATCCAATTGAGATACAAGCACTGTTCTTCATGGCTCTAAGATGCGCG CTGACTCTGTTGAAGCAAGATCCGGAAGGGAAGGAGTTCGTCGAGCGGATCGTGAAGCGACTCCACGCTCTAAGCTACCATATGCGGAGCTATTACTGGC TGGACCTGAAGCAACTTAACGACATCTACCGTTACAAGACGGAGGAGTACTCGCATACGGCGGTTAACAAGTTCAACGTCATGCCGGACTCGCTTCCGGA CTGGGTTTTCGATTTCATGCCGACTCGAGGCGGCTACTTCATCGGGAACGTAAGTCCGGCGAAGATGGATTTTCGATGGTTCTGCCTGGGGAACTGCATC GCCATCTTGTCGTCGTTGGCCACGCCGGAGCAAGCTGCCGCGATTATGGATTTGATCGAAGCGCGTTGGGACGAGTTGGTAGGGGAGATGCCGTTGAAGG TATGTTATCCTGCGATTGAAGGGCACGAGTGGCGGATTGTGACGGGTTGTGACCCGAAGAATACCCGGTGGAGCTACCACAATGGCGGGTCTTGGCCAGT GCTTTTGTGGATGCTGACGGCCGCGTGCATAAAGAGTGGGAGGCCGCAGATAGCGAGGAGGGCGTTGGAGGTGGCGGAGAGCCGATTAGGAAAGGACCAT TGGCCGGAATATTACGACGGGAAGCTAGGTCGATTCGTGGGGAAGCAAGCGAGGAAGAACCAAACATGGTCCATTGCTGGTTACTTAGTAGCCAAAATGA TGCTGGAGGATCCTTCCCATTTGGGAATGGTGTCTTTGGAGGAAGACAAACTAATGAAGCCATTGATGAAGAGATCAACTTCTTGGACTTCTTTGTTTTT CTCACCACGGAGAGAAGAAGTGGAGGAACAAGCTGGAATGCTGATGCTCAAGGCGAATATCCCTCGTTTCGCGAAGATTATCTTGGATGAGATAGCTCGT ACTGGAAAGCTGGGAGATTCATCGGTGAGTAAGGGTGACGACATCAATTACACCGAACACTTTTTATCCGACGATGTTTACGATACAGTTGATGAAGCTT TNNNNNNNNNNNNNNAGCCGCCAAGGGAATTGCCCAGACGTTTAATTCTCTAA
AA sequence Show only first row Show all	>Lus10033144 pacid=23178046 polypeptide=Lus10033144 locus=Lus10033144.g ID=Lus10033144.BGIv1.0 annot-version=v1.0 MAPILVDLSQNGTAEYSDDDSDDILKLLDTTKPIKVERPKSFGERSYNELSAATAVSPRHYRNYEATSRVDHIDYVYSPGRWSGFNSPRSSIHFESNPIV AEAWDLLRRSLVHFRGQPVGTIAALDHSDEKLNYDQVFVRDFVPSGLAFLMNGEYDVVKNFLLKTLHLQSWEKTVDHFQLGEGVMPASFKVLHKPERNIE TLIADFGETAIGRVAPVDSGFWWIILLRAYTKSTGDSSLAEMPSCQRGMRLILTLCLSEGFDTFPTLLCADGCCMIDRRMGVYGYPIEIQALFFMALRCA LTLLKQDPEGKEFVERIVKRLHALSYHMRSYYWLDLKQLNDIYRYKTEEYSHTAVNKFNVMPDSLPDWVFDFMPTRGGYFIGNVSPAKMDFRWFCLGNCI AILSSLATPEQAAAIMDLIEARWDELVGEMPLKVCYPAIEGHEWRIVTGCDPKNTRWSYHNGGSWPVLLWMLTAACIKSGRPQIARRALEVAESRLGKDH WPEYYDGKLGRFVGKQARKNQTWSIAGYLVAKMMLEDPSHLGMVSLEEDKLMKPLMKRSTSWTSLFFSPRREEVEEQAGMLMLKANIPRFAKIILDEIAR TGKLGDSSVSKGDDINYTEHFLSDDVYDTVDEAXXXXXXPPRELPRRLIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10033144 [exp]	0	1
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	4.5	0.9336
AT3G53390			Transducin/WD40 repeat-like su...		Lus10019930 [exp]	5.9	0.9137
AT1G70770			Protein of unknown function DU...		Lus10003709 [exp]	8.9	0.9229
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10012738 [exp]	9.0	0.9029
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10022737 [exp]	11.5	0.9020
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040885 [exp]	13.0	0.9114
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	14.1	0.9204
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10023192 [exp]	15.7	0.9103
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10003018 [exp]	16.6	0.8775
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	18.0	0.9151

Compare expression of checked genes

Lus10033144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.