Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75710 413 / 8e-142 C2H2ZnF C2H2-like zinc finger protein (.1) AT4G27240 213 / 2e-64 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G54630 212 / 1e-63 C2H2ZnF zinc finger protein-related (.1) AT2G29660 176 / 5e-51 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G11490 132 / 2e-34 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G62520 125 / 5e-33 unknown protein AT4G22560 120 / 2e-31 unknown protein AT4G12450 113 / 2e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034522 [exp] 647 / 0 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10024333 [exp] 446 / 7e-158 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10028083 [exp] 268 / 3e-85 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10025632 [exp] 266 / 1e-84 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10043080 [exp] 226 / 2e-69 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10018219 [exp] 177 / 7e-51 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1) Lus10040685 [exp] 175 / 4e-50 AT2G29660 322 / 9e-108 zinc finger (C2H2 type) family protein (.1) Lus10018388 [exp] 165 / 1e-46 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10007625 [exp] 156 / 1e-41 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G238300 [exp] 482 / 9e-170 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.002G023200 [exp] 451 / 2e-157 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.005G173400 [exp] 293 / 2e-95 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 286 / 7e-93 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.011G131300 [exp] 215 / 3e-65 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.001G415600 [exp] 212 / 7e-64 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.001G249900 [exp] 208 / 3e-63 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.009G043900 [exp] 208 / 4e-63 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.004G030800 [exp] 198 / 6e-59 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.003G111800 [exp] 135 / 1e-36 AT4G22560 263 / 3e-88 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033148 pacid=23178037 polypeptide=Lus10033148 locus=Lus10033148.g ID=Lus10033148.BGIv1.0 annot-version=v1.0 ATGGCTATCCTCACCTTCTACCCAGAACAAAACATCACTACCCCAAAACCCAAACCCAAACCCAAACCACCATCCACGACTGCTACCCCTCCTCCTCCTT CTCGCAATAGACACAAACAGCCCGATCTCAACAAAAAACACCCAAAACCCAAACACAAGCATCACCAACCACCTTCCTCCTCCTCCTCCTCCTCATCATG GGTTGACCAATTCAAGAACCTCCTCACTTGCAAGCAGATTGATTCTGCCGCCGTCCACCTCCCAACCAAATCCACCCCTGCCTCCTCCAAAATCGGGGGC TCATCCTGCAGCTCCATTTGCAGCTTCAAAGACGTCGTCCATGGAAACACCAGAGTCGTCCACCGCTCTGACCACTCCCCTAATACTAGCTCCCGATCCC TCCAGGACTCCTCCCTACTCATCACCCGAAATAAATTAGGCGCTAGTAGTACCAGCGGCGCCGTCAGATATTCCTCCCATACGACGCCATCGTTGGGGAG AGGCATGCAGTTTAGGAAGCTCTCTAGCTGTTACGAATGTCACACTGCCATTGACCCTTGCAGGTTTCCATCTCCAAGGACCACGATTTGCGCTTGTTCG CAGTGCGGTGACATCTTCCCAAAGCCAGAAAGTCTTGAACTCCATCAGAGAATTCGCCACGCCGTATCGGAGCTAGGCCAAGAAGATTCGGGCCGGAACA TTGTGGAGATAATCTTTAAATCGAGTTGGATGAAGAAAGACAGCTCCATCTGCAAGATCGAACGGATATTGAAGGTCCATAACACCCAACGAACCATCCA ACGGTTCGAAGATTGCAGGGACGCGGTCAAATCACGTGCTGTGAACAGCACCCGAAGGAACCCAAGGTGCGCTGCGGACGGCAACGAGCTGCTCCGCTTC TACTGCACCAGCCTCACGTGCTCCCTCGGCGCGCGTGGAGGGTCCAGCATTTGCGCCGCCATCCCCGCATGCGGAGTCTGCACCGCTATCCGTCATGGGT TCCAGGGGAAGGAGCTACGTGGCGTAAGGACCACAGCTAGCAGTGGCAGGGCCCACGACTCGCTCGTCGTCGGCGTTGAGAGGAGGGCGATGCTGGTTTG TCGGGTGATCGCCGGGAGGGTGAAGCGAGTTTCGGCGGCCGGGGAGGACTCGCAGGAAGACGGTGGTGGTTATGGAGGCGCGTATGATTCAGTGGCCGGG TGCGACGGATTGTACTCGAATTACTTGGAGGAGTTGTTTGTGTTTAATCCCAAGGCCATTCTGCCTTGTTTTGTCGTCATTTACAAAGCTGTGGAATCGT AG
AA sequence Show only first row Show all	>Lus10033148 pacid=23178037 polypeptide=Lus10033148 locus=Lus10033148.g ID=Lus10033148.BGIv1.0 annot-version=v1.0 MAILTFYPEQNITTPKPKPKPKPPSTTATPPPPSRNRHKQPDLNKKHPKPKHKHHQPPSSSSSSSSWVDQFKNLLTCKQIDSAAVHLPTKSTPASSKIGG SSCSSICSFKDVVHGNTRVVHRSDHSPNTSSRSLQDSSLLITRNKLGASSTSGAVRYSSHTTPSLGRGMQFRKLSSCYECHTAIDPCRFPSPRTTICACS QCGDIFPKPESLELHQRIRHAVSELGQEDSGRNIVEIIFKSSWMKKDSSICKIERILKVHNTQRTIQRFEDCRDAVKSRAVNSTRRNPRCAADGNELLRF YCTSLTCSLGARGGSSICAAIPACGVCTAIRHGFQGKELRGVRTTASSGRAHDSLVVGVERRAMLVCRVIAGRVKRVSAAGEDSQEDGGGYGGAYDSVAG CDGLYSNYLEELFVFNPKAILPCFVVIYKAVES

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10033148 [exp]	0	1
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Lus10011130 [exp]	8.7	0.7256
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	9.5	0.7183
AT1G58280			Phosphoglycerate mutase family...		Lus10032821 [exp]	24.7	0.6853
					Lus10004929 [exp]	40.2	0.5752
AT2G46090			Diacylglycerol kinase family p...		Lus10007917 [exp]	44.3	0.6766
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Lus10009576 [exp]	46.6	0.6775
AT4G39380			unknown protein		Lus10020841 [exp]	49.6	0.6812
AT1G58330		ZW2	transcription factor-related (...		Lus10028231 [exp]	62.5	0.5972
AT3G62200			Putative endonuclease or glyco...		Lus10038949 [exp]	72.4	0.6298
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10042215 [exp]	105.0	0.6344

Compare expression of checked genes

Lus10033148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.