Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020956 [exp] 197 / 2e-58 ND / Lus10007226 [exp] 167 / 2e-49 ND / Lus10024489 [exp] 146 / 6e-43 ND / Lus10022518 [exp] 141 / 5e-40 ND / Lus10011723 [exp] 135 / 8e-39 ND / Lus10024741 [exp] 135 / 5e-36 ND / Lus10009802 [exp] 124 / 1e-34 ND / Lus10019548 [exp] 116 / 2e-31 ND / Lus10038444 [exp] 112 / 6e-29 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033149 pacid=23178052 polypeptide=Lus10033149 locus=Lus10033149.g ID=Lus10033149.BGIv1.0 annot-version=v1.0 ATGGGATTTTGGACAGCAACTTCCAGAGGCCGAACACGTCGTGTTCCAGTTGCAGGATGGATTCTCTTGGCCAGCGAGGATGGGGCATGCTTTAGTCCAC TTCCTTCCAGGTGCAGGGTCCGCCTAATGCGGTTAAGGCATGGTGCTTCAACTTCGCCAACAAGGCATATCAACAAGTGTGGAAAGAGATTTCCCAGAAA GCTATTACCGCTTCCGGATCGGTTGATTGGGCTGAGCTGGAGACGGCTGGCATTGGAGAGCTGTTCTCCTCTGCCATTGATGGTGTCGGCCTTAGGCCCT TGTTCGATGTCAAGGAAGACGCTCAGAAGTGGGCAACCAAAGAGGTTATCACCTCTATCCGGGTCAAGCGTCTACAACAAGGAGCAAGTTCATCTAGCGC CTTTGGTCGCCAAGTTGTCGGTGGCTCAGCGGTCCCGTTTGGCCGAGACATCCAGCAAGCTATATGGGGGCTCTTACATCACTCGGCTGGTGAAGAACCT ACGGTGCCAGTCCGCTTTTGGAGCTCTCTCCACTATTCCACGGGTTTCTCCTCAGATTCTCACCAGCTCTCTCCTCAAGGTGGCCGAGATGCTGGATGTT TTCGCGGATCGCTGCCCCGCGGGCCGAGAGAGGGAAGCTATTGGCGAGGAGGGTTCCTCTCAGGGTTGTCAGCCGACCCCTCGGGATGTACAGATGGAGG ATTTGAGCAGCCGTATCACCAGTCTCTCAGGGCGGGTCGACTCCCTTCAGGCTTTCATTGCTGAGATGTACGCCTACTGGCAATACGCTTTCCAGGAGCA GCAGTGCTTCTATGCATTCACTCACCCAGAGTACCCACCCAACATTCCATACGAGTACCCTCCACTGTCTCCCCCGCATGACATGGATGACCAGTAG
AA sequence Show only first row Show all	>Lus10033149 pacid=23178052 polypeptide=Lus10033149 locus=Lus10033149.g ID=Lus10033149.BGIv1.0 annot-version=v1.0 MGFWTATSRGRTRRVPVAGWILLASEDGACFSPLPSRCRVRLMRLRHGASTSPTRHINKCGKRFPRKLLPLPDRLIGLSWRRLALESCSPLPLMVSALGP CSMSRKTLRSGQPKRLSPLSGSSVYNKEQVHLAPLVAKLSVAQRSRLAETSSKLYGGSYITRLVKNLRCQSAFGALSTIPRVSPQILTSSLLKVAEMLDV FADRCPAGREREAIGEEGSSQGCQPTPRDVQMEDLSSRITSLSGRVDSLQAFIAEMYAYWQYAFQEQQCFYAFTHPEYPPNIPYEYPPLSPPHDMDDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033149 [exp]	0	1
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	1.0	1.0000
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	2.0	1.0000
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	2.4	1.0000
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	2.8	1.0000
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020441 [exp]	3.2	1.0000
AT4G30030			Eukaryotic aspartyl protease f...		Lus10011612 [exp]	3.7	0.9333
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007138 [exp]	4.5	0.9823
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10027028 [exp]	4.6	1.0000
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10019334 [exp]	4.9	1.0000
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10006200 [exp]	4.9	1.0000

Compare expression of checked genes

Lus10033149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.