Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45730 389 / 6e-133 eukaryotic initiation factor 3 gamma subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034521 [exp] 670 / 0 AT2G45730 549 / 0.0 eukaryotic initiation factor 3 gamma subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G238200 [exp] 463 / 3e-162 AT2G45730 512 / 0.0 eukaryotic initiation factor 3 gamma subunit family protein (.1) Potri.002G023300 [exp] 456 / 1e-159 AT2G45730 529 / 0.0 eukaryotic initiation factor 3 gamma subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04189 [flax] [poplar] Gcd10p Gcd10p family
Representative CDS sequence Show only first row Show all	>Lus10033150 pacid=23178045 polypeptide=Lus10033150 locus=Lus10033150.g ID=Lus10033150.BGIv1.0 annot-version=v1.0 ATGTTCAACAGCACCGTTCAGCCGGATTCAATCCCGAGCTCCAGAGTGGCGTCGGAAGGTAGCAGTGTGTTGCTCGACGTCAACTACGGTGACCGGCTAG TTTTCTCACGGCTTACTTCTGGGGCGATTTTTGAGCTTAGGGAGCTTCTTCAATTTCTCTGCAGGACTCTGAAAATTGGCAATAAGAACTACTCACTGAA ACCGTTGTTTGGCTGTCCTTTCGGCTCCTTGTTTCAAGTTGAGAATGGAGCTGAAGGTTCATATTTGGCTCGAGTTACTCCATCTGAAAGAGAGGATATT GTCCAAGGGAAAGAAGAATGTGAATCAACAGGCGAGTCAAGGGATAATCGTGGTTTAGTTGATGATAATAAAGCTCAGAGTCTCACTGGCGATGACATTG ATGAAATGCGCAGACAAGGTGCCAAAGGAGATGAAATCATTGAAGCTCTAATTGCCAATAGTGCAACCTTCAGGAAGAAGACTGTGTTTTCTCAAGAAAA ATACAGGCTAAAAAAGCAGAAGAAATATGCTCCTAGAGTACTTCTGAGGAGACCTTTTACCCGAAGATTCCTACGTGTTGACACACTATCTCTGTTGCTG TCTCTGGCTAACGTTGGTGGAAACTCAGATGTCCTTGCTGTCGATATGGTTGGTGGTCTAGTTACTGGTGCTGTAGCCGAACGATTAGGAGGCACAGGTT GTGTGTGCAATACATATCTTGGAAGTGCACCATACTCCATGGAAATAGAAAAAACTTCAGCCATCACTGTGGAAGATACATCTCTTTCATCCGATCATGG GGTGGTAGATGTAAGTGCAGAGACTACTGCAAAGACGATCAAAATCAATAAAACGCCTAAACATGGAGAGAAGCCATCACGTGAGACCTTTCAGCAGTGG AAAGAACAGGGTTTCTCTAGCTTAATAATTGCTGCACCTGATCTAGATCCGTGGAGTGCCGTTAAAAGACTGCTTCCACTTCTGTCATATTCCGCTCCCT TTGCTTTTTACCACCAATATCTCCAGCCGCTATCGACATGCATGCACAATTTACAGGTTGAGAAAATGGCTATCGGTCTGCAACTTTCTGAACCCTGGCT TCGCGAGTATCAGGTTCTTCCGTCGAGAACTCATCCGTTTATGCAAATGAATGCATCCGGAGGCTACGTTCTAAGTGGCACCAGGATATCTACTGAAGCT AATGACACCTCGAGATCATGA
AA sequence Show only first row Show all	>Lus10033150 pacid=23178045 polypeptide=Lus10033150 locus=Lus10033150.g ID=Lus10033150.BGIv1.0 annot-version=v1.0 MFNSTVQPDSIPSSRVASEGSSVLLDVNYGDRLVFSRLTSGAIFELRELLQFLCRTLKIGNKNYSLKPLFGCPFGSLFQVENGAEGSYLARVTPSEREDI VQGKEECESTGESRDNRGLVDDNKAQSLTGDDIDEMRRQGAKGDEIIEALIANSATFRKKTVFSQEKYRLKKQKKYAPRVLLRRPFTRRFLRVDTLSLLL SLANVGGNSDVLAVDMVGGLVTGAVAERLGGTGCVCNTYLGSAPYSMEIEKTSAITVEDTSLSSDHGVVDVSAETTAKTIKINKTPKHGEKPSRETFQQW KEQGFSSLIIAAPDLDPWSAVKRLLPLLSYSAPFAFYHQYLQPLSTCMHNLQVEKMAIGLQLSEPWLREYQVLPSRTHPFMQMNASGGYVLSGTRISTEA NDTSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45730			eukaryotic initiation factor 3...		Lus10033150 [exp]	0	1
AT2G45730			eukaryotic initiation factor 3...		Lus10034521 [exp]	1.0	0.8778
AT5G26680			5'-3' exonuclease family prote...		Lus10000270 [exp]	7.7	0.8099
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	9.3	0.8058
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10040931 [exp]	9.5	0.7993
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	13.8	0.8017
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	15.2	0.7905
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10035985 [exp]	16.3	0.7691
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034109 [exp]	16.9	0.7547
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Lus10003791 [exp]	17.7	0.7537
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	17.9	0.8036

Compare expression of checked genes

Lus10033150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.