Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47870 245 / 9e-78 E2F_DP ATE2FC, ATE2F2, E2FC ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) AT2G36010 213 / 2e-64 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1.2.3) AT5G22220 211 / 1e-63 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2.3) AT5G14960 61 / 6e-10 E2F_DP DEL2, E2L1, E2FD DP-E2F-like 2 (.1) AT3G01330 58 / 4e-09 E2F_DP E2FF, E2L2, DEL3 E2F-LIKE 2, DP-E2F-like protein 3 (.1) AT3G48160 57 / 1e-08 E2F_DP E2FE, E2L3, DEL1 E2F-LIKE 3, DP-E2F-like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005209 [exp] 224 / 5e-70 AT5G22220 421 / 4e-146 E2F transcription factor 1 (.2.3) Lus10004217 [exp] 221 / 6e-68 AT2G36010 456 / 4e-158 E2F transcription factor 3 (.1.2.3) Lus10029421 [exp] 221 / 4e-67 AT2G36010 467 / 1e-161 E2F transcription factor 3 (.1.2.3) Lus10016972 [exp] 219 / 1e-66 AT2G36010 446 / 4e-154 E2F transcription factor 3 (.1.2.3) Lus10021298 [exp] 206 / 2e-61 AT2G36010 436 / 2e-149 E2F transcription factor 3 (.1.2.3) Lus10013321 [exp] 144 / 6e-39 AT5G22220 351 / 2e-117 E2F transcription factor 1 (.2.3) Lus10042941 [exp] 56 / 2e-08 AT3G48160 371 / 1e-126 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10032439 [exp] 56 / 4e-08 AT3G48160 366 / 1e-124 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10005840 [exp] 50 / 1e-06 AT3G01330 202 / 8e-64 E2F-LIKE 2, DP-E2F-like protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023400 [exp] 246 / 1e-77 AT1G47870 274 / 1e-88 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2) Potri.004G200800 [exp] 219 / 5e-67 AT5G22220 457 / 1e-158 E2F transcription factor 1 (.2.3) Potri.016G072300 [exp] 218 / 9e-67 AT2G36010 452 / 6e-157 E2F transcription factor 3 (.1.2.3) Potri.009G161900 [exp] 219 / 1e-66 AT5G22220 422 / 7e-145 E2F transcription factor 1 (.2.3) Potri.006G205100 [exp] 216 / 9e-66 AT2G36010 435 / 7e-150 E2F transcription factor 3 (.1.2.3) Potri.015G070300 [exp] 57 / 1e-08 AT3G48160 383 / 9e-132 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.012G075300 [exp] 56 / 3e-08 AT3G48160 355 / 2e-120 E2F-LIKE 3, DP-E2F-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02319 [flax] [poplar] E2F_TDP E2F/DP family winged-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10033151 pacid=23178067 polypeptide=Lus10033151 locus=Lus10033151.g ID=Lus10033151.BGIv1.0 annot-version=v1.0 ATGGCAGCCATGGCCAACGCCGCCCAAGACTCCAAACCTTCAGCTCCTCTTCCTTCTCCGTCTTCTCAGTTCCAATTCCAGCTCCTCCATTCCCATCCTC ACTTCCTCACTCCCAACCTCAAGAACATCGCACCCCCTTCTTTTCCTTCGCCCAATCGGATCTTCGCTCCCCCTCTTCCTGCTCCTCCTTCCACCTTCGC GGACCTAAGCATTCACCATCGCCCCTATATCACTCCTCCGAATACCCTCCAACCAGCTCCCGATGCCTGTTCCGCCGAGCTGATGCAAACGAGTGAAAGA GAGAACTATAACGCTCAGAATGAAGGGCTGGTGAACATGATCCCTGTTAATACTCCCACCAAGGGGAAGTATAGCAAGGGGAAGGCCTCTAAACCACGCA AGTCAGGGCCGAAAAATTTGAATCCTGATTGTGTTGACGGTCAAAATTCAGCTAATGGCTGTCGATATGACAGCTCTTTAGGGTTGTTAACGAAGAAGTT CGTCAAGTTGATCCAGGAAGCCAAAGATGGCACCCTTGATCTGAACAAGACTGCAGAAGTTTTGGAGGTTCAGAAGAGGAGGATCTATGATATAACAAAT GTTCTTGAAGGAATAAATTTGATAGAGAAAACTTCTAAAAACCACATACAGTGGAAGGGCTCTGGTGGTTCTGGGACAAAAGATTTCAATTATGTTGCCA GCAGATTAAAGGCTGAAGTTGATGGTCTTCATTCCCAAGAAAGCAGACTTGATCAAGCTATAAGGGAAGCGCAAGAAAGATTAAGACGGCTCCAAGAAGA CCAACATAATCAAAAGTATCTCTTTCTGACCAAGGAGGATGTTGTCAACCTTCCCTGCTTCCAGAATAGTACATTAATAATGGTAAAAGCCCCTCATGCA AGTAACCTCGAAGTTGATGATCCAGTTGATGACGAGCAGGATTTTAACTCTCACCATTACAGAATGACGGTCAGGAGTGTCACGGGGCCAATCGATTTAC ATCTATTGAGTAGTGACCAAGTCAAGGATGAGGTGGAAATGCAGACGTCTGATAATGGCGGATATGATACATCAGGGGTTCAGAGGATACGACCTTCGTA TGACAATATTGAGGATGATTATTGGTTCCGATCAAATAAGCAAGTCAGTCTATCAGAGCTATGGGGTGAATGA
AA sequence Show only first row Show all	>Lus10033151 pacid=23178067 polypeptide=Lus10033151 locus=Lus10033151.g ID=Lus10033151.BGIv1.0 annot-version=v1.0 MAAMANAAQDSKPSAPLPSPSSQFQFQLLHSHPHFLTPNLKNIAPPSFPSPNRIFAPPLPAPPSTFADLSIHHRPYITPPNTLQPAPDACSAELMQTSER ENYNAQNEGLVNMIPVNTPTKGKYSKGKASKPRKSGPKNLNPDCVDGQNSANGCRYDSSLGLLTKKFVKLIQEAKDGTLDLNKTAEVLEVQKRRIYDITN VLEGINLIEKTSKNHIQWKGSGGSGTKDFNYVASRLKAEVDGLHSQESRLDQAIREAQERLRRLQEDQHNQKYLFLTKEDVVNLPCFQNSTLIMVKAPHA SNLEVDDPVDDEQDFNSHHYRMTVRSVTGPIDLHLLSSDQVKDEVEMQTSDNGGYDTSGVQRIRPSYDNIEDDYWFRSNKQVSLSELWGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47870	E2F_DP	ATE2FC, ATE2F2,...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10033151 [exp]	0	1
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10006032 [exp]	4.2	0.9365
AT5G17010			Major facilitator superfamily ...		Lus10009573 [exp]	4.2	0.9321
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10006053 [exp]	6.9	0.9242
AT2G05710		ACO3	aconitase 3 (.1)		Lus10040070 [exp]	7.5	0.9124
AT2G36460			Aldolase superfamily protein (...		Lus10014373 [exp]	11.0	0.9310
AT2G16250			Leucine-rich repeat protein ki...		Lus10040455 [exp]	11.0	0.9187
AT1G48900			Signal recognition particle, S...		Lus10016213 [exp]	14.5	0.9142
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10020310 [exp]	15.5	0.9131
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Lus10006901 [exp]	17.7	0.9221
AT5G06580			FAD-linked oxidases family pro...		Lus10015987 [exp]	20.0	0.8987

Compare expression of checked genes

Lus10033151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.