Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42560 279 / 1e-93 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) AT1G75700 261 / 2e-88 HVA22G HVA22-like protein G (.1) AT1G19950 264 / 1e-87 HVA22H HVA22-like protein H (ATHVA22H) (.1) AT2G36020 197 / 5e-62 HVA22J HVA22-like protein J (.1) AT4G36720 62 / 3e-11 HVA22K HVA22-like protein K (.1) AT5G50720 53 / 9e-09 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) AT4G24960 52 / 3e-08 ATHVA22D ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22 homologue D (.1.2.3) AT2G42820 52 / 6e-08 HVA22F HVA22-like protein F (.1) AT1G74520 50 / 3e-07 ATHVA22A HVA22 homologue A (.1) AT1G69700 48 / 1e-06 ATHVA22C HVA22 homologue C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034519 [exp] 426 / 8e-152 AT5G42560 324 / 2e-111 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10024332 [exp] 334 / 2e-115 AT5G42560 330 / 9e-114 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Lus10004215 [exp] 195 / 2e-62 AT2G36020 196 / 6e-64 HVA22-like protein J (.1) Lus10016974 [exp] 196 / 3e-62 AT2G36020 210 / 2e-68 HVA22-like protein J (.1) Lus10021299 [exp] 194 / 3e-61 AT2G36020 206 / 6e-67 HVA22-like protein J (.1) Lus10029419 [exp] 176 / 2e-54 AT2G36020 198 / 1e-63 HVA22-like protein J (.1) Lus10010093 [exp] 68 / 2e-13 AT4G36720 202 / 2e-66 HVA22-like protein K (.1) Lus10007215 [exp] 67 / 3e-13 AT4G36720 196 / 2e-64 HVA22-like protein K (.1) Lus10043186 [exp] 62 / 1e-11 AT5G50720 169 / 1e-55 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023500 [exp] 298 / 2e-101 AT5G42560 296 / 2e-100 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Potri.005G237900 [exp] 296 / 1e-100 AT5G42560 274 / 1e-91 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) Potri.004G166800 [exp] 231 / 2e-75 AT1G75700 234 / 3e-78 HVA22-like protein G (.1) Potri.006G205300 [exp] 211 / 1e-67 AT2G36020 228 / 1e-74 HVA22-like protein J (.1) Potri.016G072600 [exp] 204 / 1e-65 AT2G36020 210 / 9e-69 HVA22-like protein J (.1) Potri.009G113400 [exp] 72 / 4e-15 AT4G36720 241 / 1e-81 HVA22-like protein K (.1) Potri.007G029300 [exp] 69 / 1e-13 AT4G36720 252 / 2e-85 HVA22-like protein K (.1) Potri.015G099700 [exp] 55 / 2e-09 AT5G50720 166 / 5e-54 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.012G101600 [exp] 55 / 4e-09 AT5G50720 133 / 3e-41 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.015G062800 [exp] 54 / 1e-08 AT1G74520 255 / 4e-88 HVA22 homologue A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03134 [flax] [poplar] TB2_DP1_HVA22 TB2/DP1, HVA22 family
Representative CDS sequence Show only first row Show all	>Lus10033152 pacid=23178109 polypeptide=Lus10033152 locus=Lus10033152.g ID=Lus10033152.BGIv1.0 annot-version=v1.0 ATGCTTGGATCTTTCATTACCAGAGGACTTGTGTTGATTTTCGGCTATGCTTATCCAGCATATGAGTGCTATAAAACTGTCGAGTTGAATAAACCAGAGA TTGAGCAGCTTCGCTTCTGGTGCCAGTATTGGATTTTGGTTGCTCTTTTGACTGTTAGTGAGAGAATTGGAGATGCTTTCATTTCATGGGTTCCAATGTA TAGTGAAGCTAAGTTGGCATTTTTCATATACTTGTGGTACCCTAAAACCAAGGGAACTACATACGTATATGATTCTTTCTTCAGACCATACATTGCTAAA CACGAAAATGAAATTGATCGCAACCTGCTGGAGCTGAAGACAAGGGCTGGAGACATGGCAATAGTTTACTGGCAAAGAGCTGCAAGCTACTGTCAGACCA GAGTTTTTGAAATTTTGCATTATGTTGCTGCACAGTCAACACCAGTACCTCGCGCTGCACAGCAGCAGCAACAAGGTCCTAGAGCTCGCCAGGCTCCCAA TCAACCTTCCACTGCTGCATTGAAACCAGCGACGGAGGAACCAATTCCATCTCCCAGTAGCAGCGCAGCATCAAGTCAGCATCACATGGAAGTAGATGAA GAGGTGAGCTCTTCATCCTCTGAACCCATTTCGACTGCAGCTCCAAACCCAAGGGCTCCTCCAACTACAGCAAAAGCTCCCAACATGGCAAGATCAGTTT CTGCTCCATCTGAACCTCCCAACACTAGTGCACCAGACAAGACAACGGAAGGAATGCAGGCTGAAGCAGTCACAGCAGGACCTTCATCAAACGAGCTTGC CCCGAAGGAGACGGTAATGGACGAGGCAATTCGCGCAACTCGTGGAAGATTAAGGAAAACCAGATCTGGTGCCAAGTGA
AA sequence Show only first row Show all	>Lus10033152 pacid=23178109 polypeptide=Lus10033152 locus=Lus10033152.g ID=Lus10033152.BGIv1.0 annot-version=v1.0 MLGSFITRGLVLIFGYAYPAYECYKTVELNKPEIEQLRFWCQYWILVALLTVSERIGDAFISWVPMYSEAKLAFFIYLWYPKTKGTTYVYDSFFRPYIAK HENEIDRNLLELKTRAGDMAIVYWQRAASYCQTRVFEILHYVAAQSTPVPRAAQQQQQGPRARQAPNQPSTAALKPATEEPIPSPSSSAASSQHHMEVDE EVSSSSSEPISTAAPNPRAPPTTAKAPNMARSVSAPSEPPNTSAPDKTTEGMQAEAVTAGPSSNELAPKETVMDEAIRATRGRLRKTRSGAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10033152 [exp]	0	1
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10034519 [exp]	1.7	0.8626
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10040085 [exp]	4.9	0.8446
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001416 [exp]	5.5	0.8477
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10010152 [exp]	8.5	0.8243
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10037464 [exp]	9.8	0.8110
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	11.8	0.8191
AT1G06475			unknown protein		Lus10007328 [exp]	14.1	0.8006
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	14.8	0.8432
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	15.2	0.8327
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	16.7	0.8288

Compare expression of checked genes

Lus10033152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.