Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75660 88 / 5e-21 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) AT5G42540 79 / 1e-17 AtXRN2, XRN2 exoribonuclease 2 (.1.2) AT1G54490 73 / 8e-16 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013515 [exp] 128 / 9e-38 ND / Lus10022518 [exp] 127 / 1e-36 ND / Lus10024489 [exp] 121 / 3e-35 ND / Lus10020956 [exp] 124 / 6e-34 ND / Lus10033149 [exp] 115 / 6e-32 ND / Lus10011723 [exp] 110 / 6e-31 ND / Lus10003786 [exp] 115 / 2e-30 AT1G59520 463 / 9e-159 CW7 (.1.2.3) Lus10024741 [exp] 105 / 3e-27 ND / Lus10018802 [exp] 91 / 1e-23 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G024100 [exp] 87 / 2e-20 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.005G237500 [exp] 83 / 2e-19 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.013G035600 [exp] 76 / 1e-16 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.005G048900 [exp] 75 / 2e-16 AT1G54490 1231 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G070200 [exp] 68 / 6e-14 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033153 pacid=23178105 polypeptide=Lus10033153 locus=Lus10033153.g ID=Lus10033153.BGIv1.0 annot-version=v1.0 ATGTCTTTAGCTCGGAACATGGGGGAGAAGACAAGGTTCTATCCCTATCATTATGCACCCTTTGCTTCTGATCTCAAGGACCTTGCTCAGCTGGAGATAA AGTTTGATATGGGTTCTCCTTTCAAACCATTCAATCAGCTTTTGGGAGTGTTTCCTGCTGTAAGGATGGACTCTCTTGGTAAGCGAGGTCGGGGTGTGCT TCAATCCACCTCATTTCAGGTACAGGGTTTGCCGAACGCGGTCAAGGCAAAGTGTTTCAACTTCATCGACAAGACAGAAAAGGCGGTCAGGAAGGAAATT TCTCAAATAGCAATTACTGCATCGGGGTGGGTTGATTGGGACGAGTTGGAGGAAGCAGTGATTGGAGAGCTGTTCTCGTCTACCATTAACGATGCTGGCC TTAGGCCTTGTTCGATGTGA
AA sequence Show only first row Show all	>Lus10033153 pacid=23178105 polypeptide=Lus10033153 locus=Lus10033153.g ID=Lus10033153.BGIv1.0 annot-version=v1.0 MSLARNMGEKTRFYPYHYAPFASDLKDLAQLEIKFDMGSPFKPFNQLLGVFPAVRMDSLGKRGRGVLQSTSFQVQGLPNAVKAKCFNFIDKTEKAVRKEI SQIAITASGWVDWDELEEAVIGELFSSTINDAGLRPCSM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10033153 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	4.0	1.0000
					Lus10001326 [exp]	5.2	1.0000
					Lus10004351 [exp]	6.2	1.0000
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10008244 [exp]	8.9	1.0000
					Lus10033811 [exp]	9.0	1.0000
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	9.2	1.0000
					Lus10027374 [exp]	9.2	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	9.6	1.0000
AT3G57030			Calcium-dependent phosphotries...		Lus10009015 [exp]	9.8	1.0000
					Lus10026755 [exp]	11.6	1.0000

Compare expression of checked genes

Lus10033153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.