Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31790 129 / 1e-37 Tetrapyrrole (Corrin/Porphyrin) Methylases (.1), Tetrapyrrole (Corrin/Porphyrin) Methylases (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034516 [exp] 159 / 3e-49 AT4G31790 442 / 1e-158 Tetrapyrrole (Corrin/Porphyrin) Methylases (.1), Tetrapyrrole (Corrin/Porphyrin) Methylases (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G023700 [exp] 139 / 9e-42 AT4G31790 466 / 6e-168 Tetrapyrrole (Corrin/Porphyrin) Methylases (.1), Tetrapyrrole (Corrin/Porphyrin) Methylases (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00590 [flax] [poplar] TP_methylase Tetrapyrrole (Corrin/Porphyrin) Methylases
Representative CDS sequence Show only first row Show all	>Lus10033155 pacid=23178073 polypeptide=Lus10033155 locus=Lus10033155.g ID=Lus10033155.BGIv1.0 annot-version=v1.0 ATGCTGTACATAATAGGATTGGGATTGGGCGACGAGAAGGACATCACTCTACGAGGTCTAGAAGCAGTGAAGAAATGCGATAAAGTGTTCGTCGAAGTCT ACACTTCTCTTCTCTCCTTTGGCCTTTCCTCCGACGGAATCTCAACTCTCCCGATAGAGAGAGCCGATAGAGAGATGGTGGAAGAGAAGGCCGACGAGAT TCTGTCCGACGCTCGTACATCCGACGTCGCCTTCCTTGTCGTCGGAGATCCCTTCGGATATTCGAGTGAAGAGCCTACATGGGAGTCTTTGTCGAGAGGG AAGAAGAAGTATGAACCACCGAGGTACATGACGATAAACACTGCAATTGAGCAGCTACTGGAAGTCGTTCAGAATCGTGGAAGATCTGGTATGTAA
AA sequence Show only first row Show all	>Lus10033155 pacid=23178073 polypeptide=Lus10033155 locus=Lus10033155.g ID=Lus10033155.BGIv1.0 annot-version=v1.0 MLYIIGLGLGDEKDITLRGLEAVKKCDKVFVEVYTSLLSFGLSSDGISTLPIERADREMVEEKADEILSDARTSDVAFLVVGDPFGYSSEEPTWESLSRG KKKYEPPRYMTINTAIEQLLEVVQNRGRSGM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31790			Tetrapyrrole (Corrin/Porphyrin...		Lus10033155 [exp]	0	1
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Lus10011468 [exp]	13.0	0.7561
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	13.3	0.7752
AT5G17370			Transducin/WD40 repeat-like su...		Lus10001227 [exp]	18.2	0.7578
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10005692 [exp]	18.7	0.7281
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	20.0	0.7645
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Lus10015635 [exp]	24.5	0.7209
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	28.7	0.7521
AT5G58100			unknown protein		Lus10008552 [exp]	37.6	0.7291
AT3G46220			unknown protein		Lus10004920 [exp]	40.9	0.7262
AT3G26610			Pectin lyase-like superfamily ...		Lus10029121 [exp]	51.7	0.6975

Compare expression of checked genes

Lus10033155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.