Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19940 679 / 0 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT1G75680 643 / 0 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT4G11050 417 / 1e-139 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT2G44540 397 / 7e-134 ATGH9B9 glycosyl hydrolase 9B9 (.1) AT1G64390 400 / 3e-133 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT2G44550 395 / 5e-133 ATGH9B10 glycosyl hydrolase 9B10 (.1) AT2G44560 388 / 4e-130 ATGH9B11 glycosyl hydrolase 9B11 (.1) AT2G32990 385 / 9e-129 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT1G48930 389 / 1e-128 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT4G23560 382 / 4e-128 ATGH9B15 glycosyl hydrolase 9B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034515 [exp] 957 / 0 AT1G19940 688 / 0.0 glycosyl hydrolase 9B5 (.1) Lus10014265 [exp] 598 / 0 AT1G75680 584 / 0.0 glycosyl hydrolase 9B7 (.1) Lus10025965 [exp] 566 / 0 AT1G75680 549 / 0.0 glycosyl hydrolase 9B7 (.1) Lus10009724 [exp] 409 / 6e-138 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10032377 [exp] 405 / 5e-135 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10001833 [exp] 404 / 1e-134 AT1G64390 965 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10017525 [exp] 398 / 4e-134 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1) Lus10003888 [exp] 398 / 2e-132 AT1G64390 960 / 0.0 glycosyl hydrolase 9C2 (.1) Lus10010201 [exp] 394 / 1e-130 AT1G48930 812 / 0.0 glycosyl hydrolase 9C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237700 [exp] 747 / 0 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.002G023900 [exp] 716 / 0 AT1G19940 672 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.005G115400 [exp] 617 / 0 AT1G19940 586 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.014G157600 [exp] 405 / 3e-136 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.001G092200 [exp] 403 / 2e-134 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.003G139600 [exp] 403 / 3e-134 AT1G64390 999 / 0.0 glycosyl hydrolase 9C2 (.1) Potri.001G356000 [exp] 394 / 4e-132 AT2G32990 736 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.007G071200 [exp] 397 / 5e-132 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.001G083200 [exp] 388 / 4e-130 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.002G202400 [exp] 382 / 1e-127 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10033156 pacid=23178076 polypeptide=Lus10033156 locus=Lus10033156.g ID=Lus10033156.BGIv1.0 annot-version=v1.0 ATGGGGAAAAGGGGAAGGTGCGGCTTCGTAGGGTGGTTTCTGGTGTTGGTAATATTGGGACTGCTTTCCAGTGGGATTTTCTTAGTCGTGAGGAGTAAAA TGCACAAGTCCGGCGACGACGACGGTGATTCCGTCCCAGGTTCCCCTGGACAGATACAAAAGAAGTATTCCAATGCTCTCAATGTCGCAATCCAGTTCTT CGACATCCAAAAAGCTGGTAAATTGAACGAGGACAAGATCAAATGGAGAGGGGATTCAGCGATGGATGATGGGAGCGCAGCAAATTTGGATCTTTCCAAA GGATTGTACGATGCTGGAGACCATATGAAGTTCGGATTCCCCATGGCATTCACTGCTACTGTTTTATCTTGGTCCATTTTGGAGTATGGGGATCAAATGG AGGCTGCTAATCAATTGGCAACTGCTCAAGATTCTCTCAAGTGGATCACCGATTTCCTCATCCATGCTCACCCTTCTGATAATGTCCTCTATGTTCAGGT GGGCGATCCAGTGGCAGATCACAAGTGTTGGAATAGGCCAGAGGATATGACTGAAAAGAGGCCAGTTTTCCAGGTGAACGCATCGTTTCCTGGATCAGAT GTTGCAGCTGAGGCTGCTGCAGCAATGGCTTCGGCATCTCTGGTGTTTAAGAAGAAAGATTCGGATTATTCCAACACATTGCTTAAGCATGCAAAGCAGT TGTTTAGTTTCGCTGACAAGTATAAAGGATCGTATTGTGATAGCATTCCAGGATCTGCTACTTACTACAACTCCACTGGTTATGGAGATGAGCTCTTGTG GGCTGCCTCCTGGCTGTACCATGCCACTGGGGACAAGTCTTACCTTCAGTATGTGACTGGTCAGAATGGGAATGATTTTGCTGATTGGGGAAACCCAACT TGGTTTAGTTGGGACAATAAACTTCCAGGAACACATGTTCTGTTGGCTAGATTGACATTGTTAGGTGACAAAGATACCTCAAACGCTGGGCTTCAACAGT ACAGGGAAACGGCAGATGCAGTGATGTGTGGCCTTATCCCTGACTCTCCGACAGCCACCTCCAGCAGGACCGATGGTGGTCTGATATGGGTGAGCGACTG GAATGCATTACAGCAACCAGTTGCTGCGGCATTTTTAGCATCGGTGTACAGTGACTACATGCTGACATCAGGGAAGAGAAAGTTTTCTTGTAGTGGAAGA ACATTCAAATCATCAGACCTGAAGAAATTCGCTCGGTCACAGGCCGATTATGTGCTAGGCGATAATCCGATGAAGATGAGCTATCTGGTTGGTTATGGCG ACAAATACCCACAGTTTGTACACCACAGAGGGGCTTCAATCCCAGACGACGCATCAACTGGATGCAGTGACGGGTGGAAATGGCTGGAGTCGAAGGATCC AAACCCAAACGTGGCGATGGGAGCTCTAGTTGGTGGACCATTCAAGAATGACTCATTCATCGATGATAGAAACAACACAATGCAGACTGAACCTAGCACT TACAACAGTGCTGTCATGGTTGGATTGCTTTCTGGCCTCGTCGCCACTTCTTCAGTCGTCCAGTCCTTGGCCTAA
AA sequence Show only first row Show all	>Lus10033156 pacid=23178076 polypeptide=Lus10033156 locus=Lus10033156.g ID=Lus10033156.BGIv1.0 annot-version=v1.0 MGKRGRCGFVGWFLVLVILGLLSSGIFLVVRSKMHKSGDDDGDSVPGSPGQIQKKYSNALNVAIQFFDIQKAGKLNEDKIKWRGDSAMDDGSAANLDLSK GLYDAGDHMKFGFPMAFTATVLSWSILEYGDQMEAANQLATAQDSLKWITDFLIHAHPSDNVLYVQVGDPVADHKCWNRPEDMTEKRPVFQVNASFPGSD VAAEAAAAMASASLVFKKKDSDYSNTLLKHAKQLFSFADKYKGSYCDSIPGSATYYNSTGYGDELLWAASWLYHATGDKSYLQYVTGQNGNDFADWGNPT WFSWDNKLPGTHVLLARLTLLGDKDTSNAGLQQYRETADAVMCGLIPDSPTATSSRTDGGLIWVSDWNALQQPVAAAFLASVYSDYMLTSGKRKFSCSGR TFKSSDLKKFARSQADYVLGDNPMKMSYLVGYGDKYPQFVHHRGASIPDDASTGCSDGWKWLESKDPNPNVAMGALVGGPFKNDSFIDDRNNTMQTEPST YNSAVMVGLLSGLVATSSVVQSLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10033156 [exp]	0	1
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	2.4	0.9644
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10043209 [exp]	5.7	0.9619
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10002620 [exp]	6.0	0.9577
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10027078 [exp]	6.3	0.9594
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10032592 [exp]	7.9	0.9605
AT3G10700		GalAK	galacturonic acid kinase (.1)		Lus10025946 [exp]	9.9	0.9294
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10009839 [exp]	12.6	0.9593
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040663 [exp]	13.0	0.9522
AT1G13900			Purple acid phosphatases super...		Lus10026652 [exp]	14.3	0.9293
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	15.0	0.9312

Compare expression of checked genes

Lus10033156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.