Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005830 [exp] 55 / 4e-10 ND / Lus10043259 [exp] 52 / 2e-09 ND / Lus10037746 [exp] 53 / 6e-09 ND / Lus10033001 [exp] 47 / 5e-07 ND / Lus10010048 [exp] 46 / 8e-07 ND / Lus10002009 [exp] 45 / 1e-05 ND / Lus10006296 [exp] 42 / 5e-05 ND / Lus10040622 [exp] 39 / 0.0008 AT1G31300 336 / 4e-116 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1), TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033157 pacid=23178099 polypeptide=Lus10033157 locus=Lus10033157.g ID=Lus10033157.BGIv1.0 annot-version=v1.0 ATGGACGATAGCATTGAGTTCGTGGTTAACCACGCTTGGTCCATGATTTTGTCTGTTGATGGACCAAGTTATGTTGGTGGAGATGTTGTTGAAGTTGAGA TGATGAAACTTGCTTTAACTTTTGCTATGATGAAGAAGATCTGCATTCGTGAGCTCAACTACAAATCTGTTGAGAGAATGTTCTTCCTTACCCCAGGGAG TATAATGACTGACGCAGTGAAACTGATTACAACTGATGGCTATGTTGAGAAGGTCAAACATGCGTCTAATCTAGGAGTGGCTGTAGTGAATCCTGGTACA AGGAGACGTTTGAGAAGATGGGAAGTAAGGACTGTGATGCAAGGATTAGGGTTGTACAATGACACTGACACGGGCAACATGAATTTTAGGGGATCTACTT CAAGGAACACTACAGAGGAGCAGGCCATCAGATCTTCCCAGCCACCACCAGCGACACAACCAAGTCAGTCGAATTTCGCTTTCATTACTGAAAAGGCCAA ACACTACATATACCAACAACACATTGACAACAAAAATACTGAAAAACAAACACTTTAA
AA sequence Show only first row Show all	>Lus10033157 pacid=23178099 polypeptide=Lus10033157 locus=Lus10033157.g ID=Lus10033157.BGIv1.0 annot-version=v1.0 MDDSIEFVVNHAWSMILSVDGPSYVGGDVVEVEMMKLALTFAMMKKICIRELNYKSVERMFFLTPGSIMTDAVKLITTDGYVEKVKHASNLGVAVVNPGT RRRLRRWEVRTVMQGLGLYNDTDTGNMNFRGSTSRNTTEEQAIRSSQPPPATQPSQSNFAFITEKAKHYIYQQHIDNKNTEKQTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033157 [exp]	0	1
					Lus10010597 [exp]	2.6	0.8114
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10018201 [exp]	4.9	0.7988
AT2G46520			cellular apoptosis susceptibil...		Lus10030434 [exp]	5.0	0.7268
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10000260 [exp]	5.6	0.7224
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10042070 [exp]	7.5	0.7889
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	8.6	0.8065
AT2G48060			unknown protein		Lus10029972 [exp]	10.1	0.7816
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10027507 [exp]	10.6	0.7765
AT2G48060			unknown protein		Lus10029973 [exp]	11.6	0.7691
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10012235 [exp]	13.4	0.7867

Compare expression of checked genes

Lus10033157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.