Plant FIBer expression Database

Lus10033158 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19920 736 / 0 ASA1, APS2 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
AT3G22890 679 / 0 APS1 ATP sulfurylase 1 (.1)
AT4G14680 676 / 0 APS3 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
AT5G43780 658 / 0 APS4 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034513
[exp]
971 / 0 AT1G19920 744 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Lus10006629
[exp]
674 / 0 AT3G22890 769 / 0.0 ATP sulfurylase 1 (.1)
Lus10039389
[exp]
557 / 0 AT4G14680 655 / 0.0 Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G024200
[exp]
760 / 0 AT1G19920 758 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Potri.005G237300
[exp]
751 / 0 AT1G19920 734 / 0.0 ATP SULFURYLASE ARABIDOPSIS 1, Pseudouridine synthase/archaeosine transglycosylase-like family protein (.1)
Potri.008G159000
[exp]
667 / 0 AT3G22890 767 / 0.0 ATP sulfurylase 1 (.1)
Potri.010G081200
[exp]
660 / 0 AT3G22890 758 / 0.0 ATP sulfurylase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF01747 ATP-sulfurylase ATP-sulfurylase
Representative CDS sequence
>Lus10033158 pacid=23178101 polypeptide=Lus10033158 locus=Lus10033158.g ID=Lus10033158.BGIv1.0 annot-version=v1.0
ATGTCCCTAACAATCAAGCTCAAAACCTCTCCCCACACTACTCCTCTTCTCAACACTCTCCGACAAACTCCAACCGCCTCGGCGAACTTGACATTCAGCC
GACACGGGAATGTGGCAAAACCCTTTTACGGCGCTAACCAGTTGATTTTTCCATTTCTGTCCAGGTCCACAAGGATGAAGCAGTCTGCTCGATTACCGGC
CATCAGAAGCTCCTTGATTGATCCCGACGGCGGGAAACTGGTGGATTGTGTGGTGCCCGATGGGGAGAGACCCGCAAGGGTTTCTGAGGCGGAGAGTTTG
CCCAAGGTGAAGCTGACTAAGATAGATTTGGAATGGGTTCATGTTGTGGCTGAAGGTTGGGCGAGTCCGTTGAGAGGGTTTATGAGGGAGGATGAGTATT
TGCAGTGCTTGCATTTCAATTCCTTGAGGATGGACGATGGAAATGTGGTTAATATGTCGCTCCCAATTGTGTTGGCGATTGATGATCTGACCAAGGAGAG
TATTGGGTTGGCTAAGGATGTGGCTCTTATGGGTCCTCAAGGGAATGATCCCATTGCCATTCTTCGAAGTATAGAAATATACAAGCACAACAAAGAAGAG
AGGATAGCTAGGACTTGGGGTACAACTGCACCTGGGTTGCCTTATGTGGAGGAGACCATCACTCCAGCTGGGAACTGGCTTATTGGTGGAGATCTTCAAG
TCCTGAAACCCATCAAGTACAACGACGGGCTTGATCAGTATAGGTTGTCTCCTCAAGAACTAAGAAAGGAATTTGATAAGCGTGGAGCTGATGCAGTTTT
TGCATTTCAGCTGAGGAATCCGGTTCACAACGGGCATGCTTTGTTGATGAATGACACTCGAAGGCGGCTTCTAGAAATGGGTTACAAGAATCCAATCCTG
TTGCTACATCCTTTGGGAGGTTTCACTAAGGCTGACGATGTTCCTTTGGATGTCCGTATGGAACAACACAGCAAGGTTTTAGAGGACAAAGTTCTTGATC
CAGATACCACAATTGTTGCTATATTCCCCTCGCCTATGCATTACGCTGGTCCAACTGAAGTACAGTGGCATGCCAAGGCACGGATAAATGCAGGAGCTAA
TTTTTACATTGTTGGCCGTGATCCTGCTGGTATGGGTCATCCAGTGGAGAAGAGAGATTTATATGACCCTGATCATGGAAAGAAAGTGTTAAGCATGGCT
CCTGGCCTTGAGAAACTAAATATTTTGCCATTCAGGGTAGCAGCATATGACACAGTTGCCAAGAAAATGGCCTTTTTCGATCCATCAAGAGCTCAAGAGT
TTCTTTTCATATCCGGAACAAAGATGAGGAACTTTGCGAAAACGGGGGAGAATCCACCAGATGGTTTTATGTGCCCAGGAGGTTGGGAGGTCCTAGTGAA
GTACTACCAGAGCTTACAAGCAGAGCAGCAGCCTGCTGTTGTTGTATCTGCTTAA
AA sequence
>Lus10033158 pacid=23178101 polypeptide=Lus10033158 locus=Lus10033158.g ID=Lus10033158.BGIv1.0 annot-version=v1.0
MSLTIKLKTSPHTTPLLNTLRQTPTASANLTFSRHGNVAKPFYGANQLIFPFLSRSTRMKQSARLPAIRSSLIDPDGGKLVDCVVPDGERPARVSEAESL
PKVKLTKIDLEWVHVVAEGWASPLRGFMREDEYLQCLHFNSLRMDDGNVVNMSLPIVLAIDDLTKESIGLAKDVALMGPQGNDPIAILRSIEIYKHNKEE
RIARTWGTTAPGLPYVEETITPAGNWLIGGDLQVLKPIKYNDGLDQYRLSPQELRKEFDKRGADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGYKNPIL
LLHPLGGFTKADDVPLDVRMEQHSKVLEDKVLDPDTTIVAIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAGMGHPVEKRDLYDPDHGKKVLSMA
PGLEKLNILPFRVAAYDTVAKKMAFFDPSRAQEFLFISGTKMRNFAKTGENPPDGFMCPGGWEVLVKYYQSLQAEQQPAVVVSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G19920 ASA1, APS2 ATP SULFURYLASE ARABIDOPSIS 1,... Lus10033158
[exp]
0 1
AT2G31170 FIONA, SYCOARAT... cysteinyl t-RNA synthetase, FI... Lus10001921
[exp]
2.0 0.9057
AT5G03420 5'-AMP-activated protein kinas... Lus10023003
[exp]
2.2 0.9267
AT1G20890 unknown protein Lus10005486
[exp]
4.4 0.8677
AT4G24810 Protein kinase superfamily pro... Lus10043122
[exp]
6.0 0.9022
AT3G19740 P-loop containing nucleoside t... Lus10017405
[exp]
6.0 0.8792
AT3G23530 Cyclopropane-fatty-acyl-phosph... Lus10023741
[exp]
6.5 0.8849
AT4G24175 unknown protein Lus10013559
[exp]
7.0 0.8837
AT5G43960 Nuclear transport factor 2 (NT... Lus10014469
[exp]
8.9 0.8819
AT4G22540 ORP2A OSBP(oxysterol binding protein... Lus10024613
[exp]
9.4 0.8446
AT5G04130 GYRB2 DNA GYRASE B2 (.1.2) Lus10012114
[exp]
10.4 0.8939

Lus10033158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.