Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19835 791 / 0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 719 / 0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 528 / 4e-172 Plant protein of unknown function (DUF869) (.1) AT2G23360 201 / 2e-53 Plant protein of unknown function (DUF869) (.1) AT1G77580 124 / 4e-29 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT3G05270 123 / 7e-29 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 110 / 1e-24 Plant protein of unknown function (DUF869) (.1) AT3G19370 84 / 3e-16 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3) AT2G24470 69 / 7e-14 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024324 [exp] 1152 / 0 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 1142 / 0 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024325 [exp] 1004 / 0 AT1G19835 787 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 815 / 0 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034510 [exp] 713 / 0 AT1G19835 343 / 5e-108 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10004994 [exp] 208 / 4e-55 AT2G23360 481 / 7e-154 Plant protein of unknown function (DUF869) (.1) Lus10018164 [exp] 145 / 1e-35 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10032386 [exp] 131 / 1e-35 AT1G19835 84 / 4e-20 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10029679 [exp] 142 / 1e-34 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G237100 [exp] 1032 / 0 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G024400 [exp] 1024 / 0 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 244 / 7e-67 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 237 / 1e-64 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 196 / 2e-51 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 190 / 2e-49 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.002G083400 [exp] 145 / 1e-35 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 139 / 1e-33 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 133 / 8e-32 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 127 / 6e-30 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10033160 pacid=23178107 polypeptide=Lus10033160 locus=Lus10033160.g ID=Lus10033160.BGIv1.0 annot-version=v1.0 ATGGATCGCCGGAGTTGGCCATGGAAGAAGAAGTCCTCCTCGGAGAAGGCTTCGAAAGCTGCAGCAGCAGCGGCTGAGACTCTTGATGTTGCTTTGGCTT CCGCTGAATCACATGGAAAGGCAGACAAGGAGGAGAACAACTATAAGAAGCCCAATTATGTTCAAATTTCAGTTGAATCATATACACATTTGACTAGTTT GGAGGATCAAGTAAAATCATATGAGGAGCAAGTTCAGTCACTTGATGATGAGATAACTAGTTTAAATGAAAAGCTGTCGGCAGCCGAGGAAGAGATGACT ACCAAAGACAACTTGGTGAAACAGCATGCTAAGGTTGCTGAGGAAGCTGTATGTGGTTGGGAGAAGGCTGAAGCAGAAGCTTTGGCATTGAAGAACAGTC TAGAGACGATGACACTCTCCAAGTTGACGGCTGAAGATCGTGCAGCGCATTTGGATGGTGCTCTCAAAGAATGCATGAGGCAGATAAGGAATCTGAAGGA AGAACATGAGCAGAATATACATCAACTTGTTCTTACCAAGAACAAGCAATGTGATAAAATTAGGCTTGATCTTGAAGCAAAGATAGCGAATTTAGATCAG GAACTACTTAGGTCTGCTGCTGACAATGCAGCGCTCTCAAGGTCATTGCAAGAGCGCGGTAACATGTTATTCAAGATCAGCGAAGACAAGTCACGAGCAG AAGCTGAAATCGAGCTTCTCAAGGGTAATGTGGAATCGTGTGAACGGGAAATAAACTCTATGAAGTATGAAGTGCATGTAGTATCGAAGGAGTTGGAGAT ACGCAATGAAGAGAAGAACATGAGTATGAGATCTGCTGAAGTAGCAAACAAGCAGCATATGGAAGGTGTCAAGAAAATAGCTAAGCTTGAAGCAGAGTGC CAAAGATTACGAGGCCTTGTGAGGAAAAAATTGCCGGGTCCTGCTGCTCTTGCTCAAATGAAACTTGAAGTTGAAAGCTTGGGAGGCGATTATGGAGATT CTAGGATGAAGAGGTCACCTGTCAAACCTTCTAGTCCACATATGTCACCAGTCACTGAATTTTCTGTTGACAATGCACAGAAGTTACACAAAGAGACTCA GTTCCTTACAGAACGTTTATTTGCCATGGAAGAGGAAACCAAGATGCTCAAAGAAGCTTTAGCTAATCGTAACAGTGAACTTCAGGCTTCTCGAAACTTA TGTGCTAAGGCAACAAGCAGGCTCCAGAGCTTAGAATCACAACTTCATGTCAGCAATCAACAGAAAACTTCGCCAAAATCCACTGTGCAAAATGCTAGCA ATCCACCAAGCATCACCTCCATGTCTGAAGATGGCAATGATGATCGAAGCTGTGCTGACTCTTGTAGTGCATCAATGATGTCAGAATTTTCAGAATCGAA GAAGCAAAAGATCAGTGAGAGGTCGAACAAGGCAGAAAATGCAAAGCACCTGGGGCTTATGGATGACTTCCTTGAGATGGAAAAGCTCGCTTGTTTGGAT GCCCCTGATTCCAGCAAGACTTCTGATATGGCTAATGGTGCAGTTCAAGGTAAAGAGCAGCATGGTGTGGATCAATCTGACGCTGATCAACTTCCATTGA TGAAGCTTAAATCAGACTTGTCCACATTGCTCGACTCATTGACTAAGGAAGCTGATATGAGAAAGATATTGGAGGATGTTAAAGCTGCTGTACAGGATGC ATCAGTAGAAAAGGCTTCTGTGAGTGAAATGAATCAAGAATTAGCCACTGCTGTTTCTCAGATTCATGACTTTGTATTACTCCTCCGAAAAGAAGCAATG GCAGTTCATGATGCTACAGAAGACAATGGATTGAACAAGAAAATTGATGAGCTCTCACTCACCATTGACAAAGTTCTGAGCCAAGATGCAAGCTTGACGG CCTTCATTTTCGACCTTTCAAGTGTTCTCAACGAAGCCAGTGAGCTCCGGTTCAGTGTCCTCGGATACAAAGGAAGCGAAGCTGAAATCAACAGTCCAGA TTGCATTGACAAAGTTGCATTACCTGAGAACAAGATTGTACTAGATGATGGTCCATCATCTGGTGAGACTTATGAAGCACTGAAATCGAACCCTGAGGTG CCTGATGATGGGGACCTAATGCCATCATGCACTGTCTCAATCGAAGAGTTTGAAGAGCTGAAATTGGAGAAGGACAAGATGGCCACTGATCTGGCTAGAT GTACTGCAGATCTTGAAACCACCAGATCCCAGTTACAAGAAACTGAGCAACAGCTTGTTGAAGTTAAATCAGAGTTGGCTTCTTCTAAAAAGTCAAATGC TTTGGGCGAGACACAATTGAAGTGTATGGCGGAATCGTATAGATCACTTGAAGTACGAGCAGAGGAGCTTGAAAATGAGGCCAGCCTCCTCAGAGCTAAG ACAGAGGCATTAAAAACCGAACTTGAATCTGAAAAGAGGAGCCACGAGGATGTCCTGAGCAGATGCAAGGATCTACAAGAGGAATTGGAAAAGAATGAGA GTTGCCCGGTATGCGCAGCAGCAGCAGCTGAGATGGATATCAAGAGCAAACAGGAGCAGGAACTGGCAGCTGCAGCAGAGAAGCTAGCAGAGTGCCAAGA GACCATATTCTTTCTAGGCAAGCAACTCAAGTCTCTGCAGCCTCAGACAGAAACTACTACTGGTTCATCTCCCCCTAGCGAAAGAGATGAACAAGAACCA ACCACGAGTGACACAAACTTGAAAGGCTCAGACCAGCTAGAAGCCATGGAGTCTGTGAATTCTCCTACTCAATCCCCTGTACACCTCTACAGCCACCCAG GCAGTCCATCTAATTCAGAAACCAATTTCTTGAGTTCACCAGTCAATTCAAGGTATCCGAAACACGGGTCTACGAAGTCGATTTCATCGTCATCTTCTTC ATCCAGCCTGACCCCGGAGAAACATGGAAGGGGATTTAGCAGGTTCTTCTCCTCCAAAGGAAGTAAGAATGTTTAG
AA sequence Show only first row Show all	>Lus10033160 pacid=23178107 polypeptide=Lus10033160 locus=Lus10033160.g ID=Lus10033160.BGIv1.0 annot-version=v1.0 MDRRSWPWKKKSSSEKASKAAAAAAETLDVALASAESHGKADKEENNYKKPNYVQISVESYTHLTSLEDQVKSYEEQVQSLDDEITSLNEKLSAAEEEMT TKDNLVKQHAKVAEEAVCGWEKAEAEALALKNSLETMTLSKLTAEDRAAHLDGALKECMRQIRNLKEEHEQNIHQLVLTKNKQCDKIRLDLEAKIANLDQ ELLRSAADNAALSRSLQERGNMLFKISEDKSRAEAEIELLKGNVESCEREINSMKYEVHVVSKELEIRNEEKNMSMRSAEVANKQHMEGVKKIAKLEAEC QRLRGLVRKKLPGPAALAQMKLEVESLGGDYGDSRMKRSPVKPSSPHMSPVTEFSVDNAQKLHKETQFLTERLFAMEEETKMLKEALANRNSELQASRNL CAKATSRLQSLESQLHVSNQQKTSPKSTVQNASNPPSITSMSEDGNDDRSCADSCSASMMSEFSESKKQKISERSNKAENAKHLGLMDDFLEMEKLACLD APDSSKTSDMANGAVQGKEQHGVDQSDADQLPLMKLKSDLSTLLDSLTKEADMRKILEDVKAAVQDASVEKASVSEMNQELATAVSQIHDFVLLLRKEAM AVHDATEDNGLNKKIDELSLTIDKVLSQDASLTAFIFDLSSVLNEASELRFSVLGYKGSEAEINSPDCIDKVALPENKIVLDDGPSSGETYEALKSNPEV PDDGDLMPSCTVSIEEFEELKLEKDKMATDLARCTADLETTRSQLQETEQQLVEVKSELASSKKSNALGETQLKCMAESYRSLEVRAEELENEASLLRAK TEALKTELESEKRSHEDVLSRCKDLQEELEKNESCPVCAAAAAEMDIKSKQEQELAAAAEKLAECQETIFFLGKQLKSLQPQTETTTGSSPPSERDEQEP TTSDTNLKGSDQLEAMESVNSPTQSPVHLYSHPGSPSNSETNFLSSPVNSRYPKHGSTKSISSSSSSSSLTPEKHGRGFSRFFSSKGSKNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19835			Plant protein of unknown funct...		Lus10033160 [exp]	0	1
AT1G19835			Plant protein of unknown funct...		Lus10034509 [exp]	4.2	0.8943
AT1G19835			Plant protein of unknown funct...		Lus10034510 [exp]	6.3	0.8014
AT5G40740			unknown protein		Lus10032081 [exp]	7.6	0.8594
AT5G40740			unknown protein		Lus10014617 [exp]	11.8	0.7835
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10039684 [exp]	15.3	0.8589
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	17.0	0.7778
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005322 [exp]	19.7	0.7578
AT3G33530			Transducin family protein / WD...		Lus10019403 [exp]	20.2	0.8430
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10018668 [exp]	20.4	0.8291
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10022850 [exp]	22.5	0.8431

Compare expression of checked genes

Lus10033160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.