Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75590 188 / 3e-62 SAUR-like auxin-responsive protein family (.1) AT5G10990 177 / 4e-58 SAUR-like auxin-responsive protein family (.1) AT1G19840 166 / 8e-54 SAUR-like auxin-responsive protein family (.1) AT4G34750 146 / 1e-45 SAUR-like auxin-responsive protein family (.1.2) AT4G34760 81 / 2e-20 SAUR-like auxin-responsive protein family (.1) AT2G24400 82 / 3e-20 SAUR-like auxin-responsive protein family (.1) AT5G20810 81 / 9e-20 SAUR-like auxin-responsive protein family (.1.2) AT3G43120 80 / 1e-19 SAUR-like auxin-responsive protein family (.1) AT2G21220 78 / 2e-19 SAUR-like auxin-responsive protein family (.1) AT4G34770 76 / 1e-18 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034507 [exp] 291 / 6e-103 AT1G75590 189 / 1e-62 SAUR-like auxin-responsive protein family (.1) Lus10012426 [exp] 203 / 3e-68 AT1G75590 181 / 2e-59 SAUR-like auxin-responsive protein family (.1) Lus10024322 [exp] 170 / 2e-55 AT1G75590 152 / 3e-48 SAUR-like auxin-responsive protein family (.1) Lus10012190 [exp] 133 / 2e-40 AT4G34750 147 / 4e-46 SAUR-like auxin-responsive protein family (.1.2) Lus10042374 [exp] 130 / 2e-39 AT5G10990 125 / 8e-38 SAUR-like auxin-responsive protein family (.1) Lus10026297 [exp] 130 / 3e-39 AT5G10990 125 / 2e-37 SAUR-like auxin-responsive protein family (.1) Lus10021130 [exp] 88 / 3e-23 AT4G34750 97 / 8e-27 SAUR-like auxin-responsive protein family (.1.2) Lus10017179 [exp] 86 / 2e-22 AT4G34750 89 / 6e-24 SAUR-like auxin-responsive protein family (.1.2) Lus10034888 [exp] 77 / 2e-18 AT5G20810 210 / 2e-70 SAUR-like auxin-responsive protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G024500 [exp] 210 / 5e-71 AT1G75590 194 / 1e-64 SAUR-like auxin-responsive protein family (.1) Potri.005G237000 [exp] 209 / 1e-70 AT1G75590 200 / 4e-67 SAUR-like auxin-responsive protein family (.1) Potri.004G164300 [exp] 171 / 8e-56 AT5G10990 170 / 3e-55 SAUR-like auxin-responsive protein family (.1) Potri.009G125900 [exp] 169 / 6e-55 AT5G10990 157 / 5e-50 SAUR-like auxin-responsive protein family (.1) Potri.006G126500 [exp] 82 / 7e-21 AT2G37030 131 / 1e-40 SAUR-like auxin-responsive protein family (.1) Potri.016G091500 [exp] 82 / 9e-21 AT2G37030 136 / 2e-42 SAUR-like auxin-responsive protein family (.1) Potri.018G063400 [exp] 81 / 5e-20 AT5G20810 219 / 3e-74 SAUR-like auxin-responsive protein family (.1.2) Potri.018G132400 [exp] 80 / 1e-19 AT3G43120 64 / 2e-13 SAUR-like auxin-responsive protein family (.1) Potri.009G127400 [exp] 77 / 4e-19 AT4G34770 111 / 3e-33 SAUR-like auxin-responsive protein family (.1) Potri.008G037900 [exp] 78 / 5e-19 AT2G37030 103 / 2e-29 SAUR-like auxin-responsive protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02519 [flax] [poplar] Auxin_inducible Auxin responsive protein
Representative CDS sequence Show only first row Show all	>Lus10033161 pacid=23178032 polypeptide=Lus10033161 locus=Lus10033161.g ID=Lus10033161.BGIv1.0 annot-version=v1.0 ATGTCTGCCGGACTCTCCAAATGCGCCAAAATCCGCCACATTGTGAAGCTTCGCCAAATGCTCCGACGTTGGAGGAACAAGGCAAGGATATCATCATCAC TCAACAGGACCACCGCCGCCCCTTCCGACGTCCCCTCCGGCCACGTCGCCATCTACGTCGGAATCACCTCTCGCCGGTTCGTCGTCCGAGCCACTCACCT CAATCACCCGATTTTTAAGAAACTCCTCATCCAGGCCGAGGAGGAGTACGGTTTCTCCAACCACGGTCCTCTCACCATCCCCTGCGACGAGTCCTTGTTT GAGGAAGCGATCCGGTACATTTCCAGATCCGAATCCGGGAAATCCACGACCCGGATCGTGAGTCTCGAGGATCTAGTCAAGAACTGCCGCAACATTGGGA TCGATTTGTGGACCGAGTCTCGGCCGCTTCTTGCCGAGTAA
AA sequence Show only first row Show all	>Lus10033161 pacid=23178032 polypeptide=Lus10033161 locus=Lus10033161.g ID=Lus10033161.BGIv1.0 annot-version=v1.0 MSAGLSKCAKIRHIVKLRQMLRRWRNKARISSSLNRTTAAPSDVPSGHVAIYVGITSRRFVVRATHLNHPIFKKLLIQAEEEYGFSNHGPLTIPCDESLF EEAIRYISRSESGKSTTRIVSLEDLVKNCRNIGIDLWTESRPLLAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75590			SAUR-like auxin-responsive pro...		Lus10033161 [exp]	0	1
AT1G02570			unknown protein		Lus10025023 [exp]	6.0	0.8499
AT1G08280			Glycosyltransferase family 29 ...		Lus10019538 [exp]	6.1	0.8634
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	10.0	0.8564
AT1G74030		ENO1	enolase 1 (.1)		Lus10038963 [exp]	17.5	0.8425
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10023936 [exp]	18.1	0.8482
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10022989 [exp]	21.2	0.8277
AT5G48560	bHLH	bHLH078	basic helix-loop-helix (bHLH) ...		Lus10002337 [exp]	22.1	0.8224
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	25.8	0.8390
AT1G80690			PPPDE putative thiol peptidase...		Lus10026215 [exp]	26.1	0.8288
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10018333 [exp]	26.2	0.8081

Compare expression of checked genes

Lus10033161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.