Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27230 412 / 1e-139 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G40830 409 / 9e-139 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G05390 211 / 9e-62 unknown protein AT4G01240 206 / 3e-58 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29790 187 / 8e-54 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034506 [exp] 590 / 0 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024318 [exp] 455 / 9e-157 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012420 [exp] 323 / 1e-107 AT3G27230 320 / 7e-109 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024319 [exp] 266 / 5e-86 AT3G27230 268 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020803 [exp] 238 / 3e-72 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 234 / 8e-71 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010138 [exp] 209 / 6e-61 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004494 [exp] 207 / 5e-60 AT3G05390 699 / 0.0 unknown protein Lus10035135 [exp] 205 / 3e-59 AT4G01240 367 / 1e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G236600 [exp] 471 / 7e-163 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 469 / 4e-162 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G135100 [exp] 236 / 5e-72 AT3G05390 278 / 3e-89 unknown protein Potri.004G083800 [exp] 233 / 3e-70 AT3G05390 278 / 3e-89 unknown protein Potri.004G231100 [exp] 221 / 2e-65 AT3G05390 287 / 2e-92 unknown protein Potri.004G116900 [exp] 217 / 8e-64 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G019400 [exp] 213 / 2e-62 AT3G05390 753 / 0.0 unknown protein Potri.002G165300 [exp] 211 / 2e-61 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G079000 [exp] 189 / 2e-54 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G352700 [exp] 189 / 2e-54 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10033164 pacid=23178047 polypeptide=Lus10033164 locus=Lus10033164.g ID=Lus10033164.BGIv1.0 annot-version=v1.0 ATGGAGAAAGATCTATTGGGTTACGACACCATCGATATCTCTACACCCAACATCGCTTCCGAGCTCAAATTGTACCTCCAGCACCACCGCCTCCCTTTGG GGAAAGATTCCAGAACTGGGATCACCGAAATGGTGGCTTCAGTCGGTCATTCTTGCCATAAATCCGCCGATCTCTTGTCTCAGTATATGAATTACAAGGT CTCTGGACCTTGTCCTGATGATTGGAACTTGGCCCAGAAGTTGATTCTTCGTGGATGTGAGCCTTTGCCCAGAAGGAGGTGCTTTGCTAAGTTTGTTCCC AAGGTAGGTCTTCTGCTTAAACCTTTTCCCGTCTCTCTATGGAATTCCGTCAGTGATAAGATTGCCATGAGTTGGAGTAGCTTTGGTTGCAAGAGCTTTG AATGTTTGAGTAAGAAGAAGTTGAGTACGGAATGCGTTGGTTGCTTTGATTTGAGTGGTAATGGGAATGAGAAGAGTCTAAAGTATGTCAAGGCTGAAGG GAAGAATGATTTTGTTATTGATGATGTTTTGGGATTGGCAAGCGGTGGGATTAGGACAGGGTTTGACATTGGTGGTGGTGGTGGCTCCTCTGGGACGTTT GCTGCTAGAATGGCGGAGAGGAATGTGACTGTGATTACTAACACATTGAACATTGATGCTCCCTTCAGTGAGTTTGTTGCTGCAAGAGGGCTGTTTCCTC TCTACTTGAGTTTGGATCATAGGTTTCCTTTCTACGACAATGTCTTTGATTTGATTCATATGTCCAGTGGATTGGACATCGTTGGCGGAAGCAATAAGCC TGAGAAGCTGGAGTTCCACCACCACCGCCTTCCTTTAGGCAAAGATTCCAGAACTGGGATCACAGAAATGGTGGCTTCAGTCGGTCATTCTTGCCATAAA TCCGCCGATCTCTTGTCTCAGTATATGAATTACAAGGTCTCTGGACCTTGTCCTGATGATTGGAACTTGGCCCAGAAGTTGATTCTTCGTGGATGTGAGC CTTTGCCCAGAAGGAGGTGCTTTGCTAAGTTTGTTCCCAAGGTAGGTCTTCTGCTTAAACCTTTTCCCGTCTCTCTATGGAATTCCGTCAGTGATAAGAT TGCCATGAGTTGGAGTAGCTTTGGTTGCAAGAGCTTTGAATGTTTGAGTAAGAAGAAGTTGAGTACGGAATGCGTTGGTTGCTTTGATTTGAGTGGTAAT GGGAATGAGAAGAGTCTAAAGTATGTCAAGGCTGAAGGGAAGAATGATTTTGTTATTGATGATGTTTTGGGATTGGCAAGCGGTGGGATTAGGACAGGGT TTGACATTGGTGGTGGTGGTGGCTCCTCTGGGACGTTTGCTGCTAGAATGGCGGAGAGGAATGTGACTGTGATTACTAACACATTGAACATTGATGCTCC CTTCAGTGAGTTTGTTGCTGCAAGAGGGCTGTTTCCTCTCTACTTGAGTTTGGATCATAGGTTTCCTTTCTACGACAATGTCTTTGATTTGATTCATATG TCCAGTGGATTGGACATCGTTGGCGGAAGCAATAAGCCTGAGAAGCTGGAGTTCTTGATGTTTGACATCGATCGTATACTGAGAGCTGGAGGGTTGTTTT GGTTGGATAACTTGTATTGTGCCAATGATGACAAGAAATGGGCAGTGACTCGGTTGATAGAGAAGTTTGGTTATAAGAAGTTGAAATGGGTTGTGGGAGA GAAGGTAGATACAGCTGGCAAATCTGAAGTTTATTTATCTGCTGTTCTTCAAAAGCCTGCAAGAGGCTGA
AA sequence Show only first row Show all	>Lus10033164 pacid=23178047 polypeptide=Lus10033164 locus=Lus10033164.g ID=Lus10033164.BGIv1.0 annot-version=v1.0 MEKDLLGYDTIDISTPNIASELKLYLQHHRLPLGKDSRTGITEMVASVGHSCHKSADLLSQYMNYKVSGPCPDDWNLAQKLILRGCEPLPRRRCFAKFVP KVGLLLKPFPVSLWNSVSDKIAMSWSSFGCKSFECLSKKKLSTECVGCFDLSGNGNEKSLKYVKAEGKNDFVIDDVLGLASGGIRTGFDIGGGGGSSGTF AARMAERNVTVITNTLNIDAPFSEFVAARGLFPLYLSLDHRFPFYDNVFDLIHMSSGLDIVGGSNKPEKLEFHHHRLPLGKDSRTGITEMVASVGHSCHK SADLLSQYMNYKVSGPCPDDWNLAQKLILRGCEPLPRRRCFAKFVPKVGLLLKPFPVSLWNSVSDKIAMSWSSFGCKSFECLSKKKLSTECVGCFDLSGN GNEKSLKYVKAEGKNDFVIDDVLGLASGGIRTGFDIGGGGGSSGTFAARMAERNVTVITNTLNIDAPFSEFVAARGLFPLYLSLDHRFPFYDNVFDLIHM SSGLDIVGGSNKPEKLEFLMFDIDRILRAGGLFWLDNLYCANDDKKWAVTRLIEKFGYKKLKWVVGEKVDTAGKSEVYLSAVLQKPARG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10033164 [exp]	0	1
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10034506 [exp]	2.0	0.8119
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10042324 [exp]	2.2	0.8533
AT1G51630			O-fucosyltransferase family pr...		Lus10037328 [exp]	6.5	0.8153
AT1G12500			Nucleotide-sugar transporter f...		Lus10007029 [exp]	10.1	0.8276
AT2G31440			unknown protein		Lus10025574 [exp]	15.7	0.8045
AT3G10290			Nucleotide-sugar transporter f...		Lus10018043 [exp]	17.7	0.8039
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	18.4	0.8023
AT1G64980			Nucleotide-diphospho-sugar tra...		Lus10005005 [exp]	18.6	0.7940
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Lus10029353 [exp]	19.5	0.8089
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10024318 [exp]	23.2	0.7355

Compare expression of checked genes

Lus10033164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.