Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39600 207 / 9e-68 unknown protein AT5G15320 47 / 3e-07 unknown protein AT3G01130 40 / 8e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002100 [exp] 186 / 1e-56 ND / Lus10021579 [exp] 169 / 3e-52 ND / Lus10032702 [exp] 171 / 1e-51 AT5G56730 135 / 7e-36 Insulinase (Peptidase family M16) protein (.1) Lus10023759 [exp] 166 / 5e-51 ND / Lus10009892 [exp] 155 / 6e-46 ND 39 / 0.003 Lus10040596 [exp] 153 / 3e-45 ND / Lus10025371 [exp] 138 / 2e-38 ND / Lus10007166 [exp] 132 / 2e-37 ND / Lus10029758 [exp] 133 / 1e-34 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106900 [exp] 224 / 4e-74 AT5G39600 208 / 6e-71 unknown protein Potri.004G228566 [exp] 223 / 7e-74 AT5G39600 220 / 8e-76 unknown protein Potri.005G236500 [exp] 47 / 3e-07 AT5G15320 36 / 9e-05 unknown protein Potri.002G024900 [exp] 47 / 3e-07 AT5G15320 76 / 1e-20 unknown protein Potri.009G125832 [exp] 44 / 6e-06 AT3G01130 55 / 2e-12 unknown protein Potri.004G164066 [exp] 43 / 6e-06 AT3G01130 55 / 2e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033166 pacid=23178034 polypeptide=Lus10033166 locus=Lus10033166.g ID=Lus10033166.BGIv1.0 annot-version=v1.0 ATGTTGAAGTTCCTGTCGAAGGTGCGGATAGAGTTCAATGCCTTGGATCCTCGCTTAGCTTCATGTATGGAGTTCTTAGCACAGTGCAACGCTCGCAAGG CTAAAGAATCCAACCCAGCCTGCCAGGTCCAGGTCAAGCGCCGCACCGATGACCACCCGCCTCAGATCACCGTCACTTTCGTCAACGGCGTCGAGGAGGT ATTCGACGGTACCAAAACCCCTGCGCAGACTATTAGGACCATGATTCTGGAGAAAGGTCAGTACCTTGAGACAGAGCAAATGTTCAAAGAAGCAGGGGAG AAGTGGCCCGTTATCATCCCCGAGGAAGAGATCCATATGCCTGCTCCTGGAACTAAGGGTTTCGCAGTGGCAGAAGGGAAGAGAACAATGGCGCCACCTC CAGGTCCCTACTCAGGCGGAAGTTCCCTCGCTCTGGTTGCTCGTGCTTCAGCATTCAGTTTCGGAGTAGTGTATGGAAGTTTAAAGCTCAAGTATCTTAA GTTAGAGACGATGTCGATGGGAGATGATGGCTTGTCACGGTTTATCGATCGTGCTATCTCTGCATCAGATAGAAAATTGGTGCAGGAGAAATGGAAGGGA AAGAAATCTAGGCTAGGGGATGATGGACAGTCTAGTGCGCAGTTTCAGATTCCTGGACCGATATATGTGGACCCCGATCTACACTCTGCTGGGAAGGAGC TGACTGTTGAGGAGATTTTTGCTACCCAGGCTCCGGATTTGGCCGATGACATCCATAACATTCGGGATTACTCCGACGGCGACGATGAGCATATCCCGTC GGACAGTGACGGCAATGATGATGACGATTGTGATGTCTCGTTTCTCCCTTTCTGGCTGGCTAATGCACGCTCGCGAAAGAGACAAGCAGGGAGAGGTGTA GCCGCTCCATCTGGCTCTAGAGAGGGTACTAGATCCTCTCGTGGGTCGTAG
AA sequence Show only first row Show all	>Lus10033166 pacid=23178034 polypeptide=Lus10033166 locus=Lus10033166.g ID=Lus10033166.BGIv1.0 annot-version=v1.0 MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQVQVKRRTDDHPPQITVTFVNGVEEVFDGTKTPAQTIRTMILEKGQYLETEQMFKEAGE KWPVIIPEEEIHMPAPGTKGFAVAEGKRTMAPPPGPYSGGSSLALVARASAFSFGVVYGSLKLKYLKLETMSMGDDGLSRFIDRAISASDRKLVQEKWKG KKSRLGDDGQSSAQFQIPGPIYVDPDLHSAGKELTVEEIFATQAPDLADDIHNIRDYSDGDDEHIPSDSDGNDDDDCDVSFLPFWLANARSRKRQAGRGV AAPSGSREGTRSSRGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39600			unknown protein		Lus10033166 [exp]	0	1
AT5G09995			unknown protein		Lus10035858 [exp]	2.0	0.8091
AT3G51010			unknown protein		Lus10026320 [exp]	7.5	0.7951
AT2G27730			copper ion binding (.1)		Lus10004865 [exp]	9.5	0.7421
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10020745 [exp]	11.2	0.7389
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10014233 [exp]	13.0	0.7778
AT3G49910			Translation protein SH3-like f...		Lus10011540 [exp]	13.1	0.8009
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10032390 [exp]	20.3	0.7867
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10003505 [exp]	24.3	0.7419
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10017890 [exp]	25.0	0.7369
AT3G02080			Ribosomal protein S19e family ...		Lus10030702 [exp]	30.3	0.7588

Compare expression of checked genes

Lus10033166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.