Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19870 210 / 7e-57 IQD32 IQ-domain 32 (.1) AT1G74690 92 / 6e-19 IQD31 IQ-domain 31 (.1) AT1G14380 90 / 3e-18 IQD28 IQ-domain 28 (.1.2.3) AT1G18840 87 / 1e-17 IQD30 IQ-domain 30 (.1.2) AT2G02790 78 / 1e-14 IQD29 IQ-domain 29 (.1) AT3G49260 68 / 1e-11 IQD21 IQ-domain 21 (.1.2.3) AT4G14750 67 / 3e-11 IQD19 IQ-domain 19 (.1) AT3G52290 67 / 4e-11 IQD3 IQ-domain 3 (.1) AT1G01110 64 / 3e-10 IQD18 IQ-domain 18 (.1.2) AT5G03040 62 / 9e-10 IQD2 IQ-domain 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042173 [exp] 100 / 1e-21 AT1G74690 400 / 3e-132 IQ-domain 31 (.1) Lus10004263 [exp] 96 / 4e-20 AT1G74690 407 / 6e-135 IQ-domain 31 (.1) Lus10030784 [exp] 84 / 3e-16 AT2G02790 214 / 3e-61 IQ-domain 29 (.1) Lus10013261 [exp] 82 / 9e-16 AT1G14380 212 / 7e-61 IQ-domain 28 (.1.2.3) Lus10021904 [exp] 71 / 2e-12 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10006613 [exp] 66 / 1e-10 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10014870 [exp] 66 / 1e-10 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10012608 [exp] 64 / 3e-10 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10010104 [exp] 64 / 3e-10 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G025200 [exp] 213 / 1e-57 AT1G19870 315 / 5e-95 IQ-domain 32 (.1) Potri.005G236200 [exp] 209 / 2e-56 AT1G19870 340 / 2e-104 IQ-domain 32 (.1) Potri.012G069900 [exp] 98 / 7e-21 AT1G74690 387 / 8e-128 IQ-domain 31 (.1) Potri.017G079600 [exp] 97 / 8e-21 AT1G74690 225 / 2e-66 IQ-domain 31 (.1) Potri.015G063600 [exp] 96 / 5e-20 AT1G74690 407 / 2e-135 IQ-domain 31 (.1) Potri.006G226600 [exp] 74 / 2e-13 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.008G156700 [exp] 72 / 7e-13 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.010G082600 [exp] 69 / 5e-12 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.016G086300 [exp] 66 / 6e-11 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.014G104600 [exp] 65 / 2e-10 AT4G00820 432 / 2e-146 IQ-domain 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10033167 pacid=23178064 polypeptide=Lus10033167 locus=Lus10033167.g ID=Lus10033167.BGIv1.0 annot-version=v1.0 ATGGGGAGACCTAACTCGTGCTTCAAAATAATCACATGCGGCGGCGATTCCTCAGCTGAAAAGGATGACATTGATATCCAAGCACCGGAGAACAAAGGTT CAAGTGACAAGCGGGGGTGGAGTTTTCGGAAAAGGTCAGCCAGTCATCGAGTACTAAGCAATTCTGTAACATCAGAAGCCCCCTCTGCAGCAAATAAAGA CAGCATTCAACCTGACAGCCTTAACTATCAACAACGGGATACTGCGTCTGTTCCTGATAAAAAATTAGTTGCTGAATGCATCGATGAGAAACCACCACTA TCCATCTCAGTGGATGAAAAAGCTTCCAAGACCACAGTAAATAATGAAAGCACTGAGCTTGCCAGTCTTAACTATCGACAACAGGATACTGCTTCTGTTT CTGATAAAAAATCAGTTGCGGAGTCCATTGATGAGAACCCACCTCTGTCCATTTCAGCGGATGAAAAAGCATCCAAGACCACTGCAAATAAAGAAAGCAG TGAATCTAACAGTTTTGTCTATCAACAGCAGGATTCTGCTTCTGTTCCTGATAAAACTTCGGTTGAAGAAACCCTTGATGAGAAACCATCGCTGTCCATT TCAGAGGATAAAAAAGCGTCCACGATCACAGCACATGCAGAAAGCCTCGATTCTGCTTATGCTTACCAAAAACAGGATGCTGCTTTGTTACCCATGAAAA ATTCAGTTGCAGAATGCACTGATGAAAAGCCAACTTTGTCCATTTCAGCGGATGAAAAAGGATCCAAGACCATTGCTCTTTGTAAGGACGGGAAGGAAGT TGAGGCCCATGTGGAAGAGTCAGTTGCTATTATCCTGCAGTCCTCTGCCAGAACTTTTATGGCTCAGAAAGAACTTGTCAGGCTTAAGAGTGTGGTTAGG TTGCAAGCTGCTATACGCGGTCACTTGGTTAGACAATGTGCACTTGGCTCCCTACGGTGTGTTCAGGCTATCGTTAAAATGCAAATACTTATACGTGCCC GACATGCTCACATCCGAGGGTCAAATGTGGAAATTGGAGAAGATGAGAAAAAGGCTTCTGCAAAAACTTCGAAAATGGATCTCTCCATAGCTAAACCACC AGTAACTTATACATCACTTCAGAAGTTGCTTAGCAACAGGTTTGCTCGTCAGCTAATGGAATCAACACCGAAGTCAAGGCCCATCAGCATCAAGTGTGAT CCTTTACAACCAAACTCCACTTGGACCTGGTTCGAAAGATGGATGGCTCCTTCTCCAGTTGAGCCCACACCGAAACCAGTGCCGTGTGAGAAAGTGGAAG AAGATACAGAGGGGGATGCTTTACCTGTGGAAGAATCTAAAGGTTCCCATGTGATAGAAGTGAAGGAAACGGGGTATGATTCTCCTGTGGAAGAATCCGA GGGTTTCCATGTGGTAGAATTGAAGAAAGTGGATTATGCTTCTCCTCTAGAAGAATCCGAGGGTTCCCATGTTGTAGAAGAGAAGAAAGAGGAGTATGCT TCTCCTGTGGAAGAACCAGCGCATTCCCAAGTGTTTGAAGATTCAAAATCTAACATAAATGAGGTAGTGTCATCTCCAAAAAGTGAAGAATATCAGATTG CTTATTATGATGCGAGTAATTCCAGTTTCAAGAGATGTTATTCAGTAGAAGACAAGCTGGAGCAGCCTCAAGGTGATTTGAGTATTCATTGCAATGATGT TCAAGAGGCATCTACTTACTCGAGTTCTCTTCCGGAAAAGGCAAAGCCCAGCATAGACTACCAACCAGAACCAGAGACTCTTGTTTGTTTGCAAGGACAA GAATGTGAACAACCTGGACCGCCACCATCAATTAAAAAGGTTGCCACCGAGGAATTACTGAATGATTCAAAGAAAGTTAGCGATCCTGCATTTGTTGCTA CCCTTTCAAAATTTGAGGGGCTGAGTTCAACAACCGATTCTAACAAAGCTTCATTGAAAGAGACCTTGATCATCACCAAGGATTCACCTGATCATACGTC TGAAGTTGGAGTTGCAGAACACAAAGGAGTAACAATTTTGGAAGAACCCAATAATCCTACAACTCCGAACAATGTGGGTGATGAAGAATTCAAAAACACG TTGGGAGATTCATTTGCAAACCCTGAAGGGATTATTGGTGTGGAGAATGAAGCTATCATGGTACAACGAGAAGAAGAAGCTGGCAGTGCTGGTGCTGACG TGCCGTACAAGTCATCACCAGAAGCCTCTTTCAGAAACCGCATGACTATTACTGCAGAGTCTCATGGAACACCTGCTAGTCAGGTTTCTGTATCCAAAAG TGAGAAATCTGAAAGATCTTCCTCCAACAATAAACGGAAGTCTCTATCTGCTGGTAGTAAAAAGTTGGCCTCATCTCCTAAAACCCATTCTGCTAAAGAT GAAAAGAAGGGAAAGAGGCGGAGCTCATTCAGTTCGCCTAGGTGGGAGGATGAAGCTAGAGAGAAGCAAGAGCCAAGACCTAGTAATGGCAGCAATAGCA CACTCCCTCGTTTCATGCTAGCCACTGAGTCTGCAAGGGCCAAGCTTCAATTGAACAATAGCTCGCCGAGGTCAAGCCCAGATTCTGCGCATGACAGAGA TTATATGAAGAAGCGGCATTCTTTGCCTGGATCAAATGGTAAAGAAGGTTCCCCGCAGATCCAGCGAACTTTTTCACAGGTGGAGTCAGCTCCAAAGTCA AACACCAGCCTCGCTTCTCGAGGTATGTTCTCATAA
AA sequence Show only first row Show all	>Lus10033167 pacid=23178064 polypeptide=Lus10033167 locus=Lus10033167.g ID=Lus10033167.BGIv1.0 annot-version=v1.0 MGRPNSCFKIITCGGDSSAEKDDIDIQAPENKGSSDKRGWSFRKRSASHRVLSNSVTSEAPSAANKDSIQPDSLNYQQRDTASVPDKKLVAECIDEKPPL SISVDEKASKTTVNNESTELASLNYRQQDTASVSDKKSVAESIDENPPLSISADEKASKTTANKESSESNSFVYQQQDSASVPDKTSVEETLDEKPSLSI SEDKKASTITAHAESLDSAYAYQKQDAALLPMKNSVAECTDEKPTLSISADEKGSKTIALCKDGKEVEAHVEESVAIILQSSARTFMAQKELVRLKSVVR LQAAIRGHLVRQCALGSLRCVQAIVKMQILIRARHAHIRGSNVEIGEDEKKASAKTSKMDLSIAKPPVTYTSLQKLLSNRFARQLMESTPKSRPISIKCD PLQPNSTWTWFERWMAPSPVEPTPKPVPCEKVEEDTEGDALPVEESKGSHVIEVKETGYDSPVEESEGFHVVELKKVDYASPLEESEGSHVVEEKKEEYA SPVEEPAHSQVFEDSKSNINEVVSSPKSEEYQIAYYDASNSSFKRCYSVEDKLEQPQGDLSIHCNDVQEASTYSSSLPEKAKPSIDYQPEPETLVCLQGQ ECEQPGPPPSIKKVATEELLNDSKKVSDPAFVATLSKFEGLSSTTDSNKASLKETLIITKDSPDHTSEVGVAEHKGVTILEEPNNPTTPNNVGDEEFKNT LGDSFANPEGIIGVENEAIMVQREEEAGSAGADVPYKSSPEASFRNRMTITAESHGTPASQVSVSKSEKSERSSSNNKRKSLSAGSKKLASSPKTHSAKD EKKGKRRSSFSSPRWEDEAREKQEPRPSNGSNSTLPRFMLATESARAKLQLNNSSPRSSPDSAHDRDYMKKRHSLPGSNGKEGSPQIQRTFSQVESAPKS NTSLASRGMFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19870		IQD32	IQ-domain 32 (.1)		Lus10033167 [exp]	0	1
AT1G31780			unknown protein		Lus10035691 [exp]	3.2	0.8601
AT4G01290			unknown protein		Lus10036389 [exp]	6.0	0.8206
AT1G47670			Transmembrane amino acid trans...		Lus10032751 [exp]	8.4	0.8293
AT1G20760			Calcium-binding EF hand family...		Lus10012248 [exp]	8.4	0.8654
AT3G51050			FG-GAP repeat-containing prote...		Lus10025977 [exp]	12.3	0.7795
AT4G26450		WIP1	unknown protein		Lus10027096 [exp]	15.5	0.8451
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10032897 [exp]	18.3	0.8173
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10034113 [exp]	18.7	0.8560
AT5G19390			Rho GTPase activation protein ...		Lus10036047 [exp]	21.8	0.8089
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10030357 [exp]	23.1	0.8391

Compare expression of checked genes

Lus10033167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.