Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19880 667 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 104 / 8e-24 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G16040 78 / 3e-15 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G26100 76 / 2e-14 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT3G02510 75 / 2e-14 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT3G15430 75 / 3e-14 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT4G14368 76 / 5e-14 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G23270 74 / 1e-13 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G08710 72 / 4e-13 RUG1 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) AT3G03790 71 / 1e-12 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039618 [exp] 102 / 4e-23 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 98 / 1e-21 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10010614 [exp] 83 / 3e-19 AT1G19880 48 / 8e-08 Regulator of chromosome condensation (RCC1) family protein (.1) Lus10033543 [exp] 87 / 4e-18 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10017581 [exp] 84 / 4e-17 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10006455 [exp] 84 / 1e-16 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10011399 [exp] 83 / 1e-16 AT3G26100 805 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10006242 [exp] 76 / 3e-14 AT3G26100 796 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10038991 [exp] 75 / 1e-13 AT4G14368 1265 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G026600 [exp] 714 / 0 AT1G19880 703 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.005G236000 [exp] 708 / 0 AT1G19880 674 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 102 / 4e-23 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.011G121900 [exp] 89 / 2e-18 AT3G15430 743 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.001G402800 [exp] 81 / 7e-16 AT3G15430 723 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.015G009400 [exp] 79 / 2e-15 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.012G018600 [exp] 79 / 2e-15 AT3G26100 798 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.004G101800 [exp] 75 / 3e-14 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 74 / 4e-14 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.008G167500 [exp] 73 / 2e-13 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10033168 pacid=23178057 polypeptide=Lus10033168 locus=Lus10033168.g ID=Lus10033168.BGIv1.0 annot-version=v1.0 ATGTCGGCGGCTGAACCGGAGAAGAAGGTGGACGAGGAAGGAACAGACATGAAAGGAGGGGAGTTGCTCTTCTGTGGGGCCACGTGTTGGGATGTTATTG GCCGTAAGAAAGGTCTTCTTCCCGGGAACTTGGTTTCTCCCACTCGGCTACGGCCTCTAGTCGGCATCGACATACGTTTTGTTGCATCTGGATGCACGTC GTGCCATTGTGTGGCATTGGATGTTGATGGTCGTTGCTACACTTGGGGCCGGAACGAGGCATGTCGGCAACTGGGTCACGGAGACACGATTCAGCGGGAT CGGCCAACAGTCGTTTCCGAACTTTCAAAGCATAAGATCATCAGAGCTGGAGGAGGCAAGAATCATACTGTAGTTGTTACTGAAGAAGGTGAATCGCTTG CATTTGGCTGGAATAAGAATGGACAGCTGGGTTCTGGTTCTGTGAAAAATGAAATTGAGTCATCTCCTGTTCGTTGTCTTGTGTCTGATGTCAAAACTAC TGCTTGTGGTGCCGACTTCACTGTGTGGCTATCATCTGCTGAAGGGGCTACCATATTAACTGCAGGGCTTCCGCAATATGGTCAGCTTGGACATGGCACT GATAATGAGTATAATACTAAGGACAGCTCAGTAAAGCTTGCATATGAAGCCCAGCCTCGTCCTAAAGCAATTGCAGCTTTTGCGAAGGAAACTGTCGTAA AAGTTGCTTGTGGGGCAAACCATACAGTGGCTGTGGATTCAAATGGTTATGTTTACACGTGGGGTTATGGCGGTTATGGAAGGCTGGGACATAGAGAGCA GAAAGATGAGTGGTCACCTCGTCGTGTTGATATTTTTCAACGGCAGAATGTTTTGCCACCAGATGCAATAATTTCAGCTGGTGCTGTCAATTCATCATGC ACAGCAGGTGGCGGGCAATTGTACATGTGGGGGAAAATAAAGAATACTGGGGATGACTGGATGTACCCTAAGCCAGTAATGGATTTAAGTGGTTGGAATA TACGTTGCATGGACTCTGGACACATGCACCATTTTGTTGGTGCTGATAGCTCCTGCATAAGTTGGGGCCAGGCTCAATATGGTGAATTGGGATATGGTCC TCTGGGACAGAAGTCCTCAGCAATACCCAAGAAGGTAGATACTCTTGAGAGCATGCATGTCTTAGGTGTTGCCTGTGGGTTGGGTCATTCAATGGCTATA GTTGACAGAACTAAAATTGGCGATCAACTTGATCAGCTTGATGTATACGATGGCAAAGATGCTGCTGAAGAAATTGAGGTGCCTCAGACCAAGAAAACTC CAGTAAAGCAAAATGCTAAAAAGGGTTCAGCAGCTAAAGCTTCCGATAGTTCGAAGAAGCGTAAGAAGAAGTACAAAGATTCATCAGAATCGGAGGAAGA AGAAGCTAGTGACGAAGAAGATGAAGATGAAGAAGATGATGATGAAAGTGATGAAAGTGAAGGTGTCTCCAACGGCAAGAAGGCGCCAAAGGGTAAGCGA GGTGGGAAAGCAGCTGCTGGGAAAGGTACAGGGCGTGGAAGAGGCCGCCCTCCAGCTGCAAGCAAGACTGCAAATTCTTCTCAGGCAAAGTCCGGCAAGA GAGGAAGACCACGCAAGTCATAG
AA sequence Show only first row Show all	>Lus10033168 pacid=23178057 polypeptide=Lus10033168 locus=Lus10033168.g ID=Lus10033168.BGIv1.0 annot-version=v1.0 MSAAEPEKKVDEEGTDMKGGELLFCGATCWDVIGRKKGLLPGNLVSPTRLRPLVGIDIRFVASGCTSCHCVALDVDGRCYTWGRNEACRQLGHGDTIQRD RPTVVSELSKHKIIRAGGGKNHTVVVTEEGESLAFGWNKNGQLGSGSVKNEIESSPVRCLVSDVKTTACGADFTVWLSSAEGATILTAGLPQYGQLGHGT DNEYNTKDSSVKLAYEAQPRPKAIAAFAKETVVKVACGANHTVAVDSNGYVYTWGYGGYGRLGHREQKDEWSPRRVDIFQRQNVLPPDAIISAGAVNSSC TAGGGQLYMWGKIKNTGDDWMYPKPVMDLSGWNIRCMDSGHMHHFVGADSSCISWGQAQYGELGYGPLGQKSSAIPKKVDTLESMHVLGVACGLGHSMAI VDRTKIGDQLDQLDVYDGKDAAEEIEVPQTKKTPVKQNAKKGSAAKASDSSKKRKKKYKDSSESEEEEASDEEDEDEEDDDESDESEGVSNGKKAPKGKR GGKAAAGKGTGRGRGRPPAASKTANSSQAKSGKRGRPRKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	0	1
AT5G39550		ORTH1, VIM3	VARIANT IN METHYLATION 3, ORTH...		Lus10039127 [exp]	1.0	0.9685
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	2.8	0.9670
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	4.0	0.9599
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	4.2	0.9658
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10026477 [exp]	4.2	0.9499
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10007782 [exp]	4.8	0.9386
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10010163 [exp]	6.7	0.9573
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	6.9	0.9538
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031761 [exp]	7.5	0.9501
AT3G25430			Polynucleotidyl transferase, r...		Lus10020388 [exp]	8.3	0.9186

Compare expression of checked genes

Lus10033168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.