Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01310 211 / 1e-69 Ribosomal L5P family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036390 [exp] 286 / 2e-98 AT4G01310 349 / 1e-121 Ribosomal L5P family protein (.1) Lus10007915 [exp] 284 / 4e-98 AT4G01310 364 / 3e-128 Ribosomal L5P family protein (.1) Lus10010251 [exp] 142 / 6e-44 AT4G01310 179 / 2e-57 Ribosomal L5P family protein (.1) Lus10036391 [exp] 85 / 5e-22 AT4G01310 82 / 1e-20 Ribosomal L5P family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G154600 [exp] 220 / 6e-73 AT4G01310 361 / 4e-127 Ribosomal L5P family protein (.1) Potri.014G089100 [exp] 194 / 8e-63 AT4G01310 311 / 3e-107 Ribosomal L5P family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00673 [flax] [poplar] Ribosomal_L5_C ribosomal L5P family C-terminus CL0652 [flax] [poplar] S24e_L23_L15e PF00281 [flax] [poplar] Ribosomal_L5 Ribosomal protein L5
Representative CDS sequence Show only first row Show all	>Lus10033169 pacid=23178081 polypeptide=Lus10033169 locus=Lus10033169.g ID=Lus10033169.BGIv1.0 annot-version=v1.0 ATGCCAAGGGATTGGACGCAGGTGGTCAACGATTTAGTTCGGATTGCATGTCAAAGGCCAGTGAAAACACGAGCTAAGAACTCCGTTGCCACTTTCAAGA TCAGGGAGGGTCAGCCCCTTGGCATTGCAGTGACACTCAGAGGAGCTGTGATGTGGGCATTCTTAGACAGGCTGATAAACTTGGGGCTACCTAGGACAAG AGATTTCCAAGGACTGAATCCAAACAGCTTCGACGGACACGGGAACTACAGCGTCGGGATAAGAGAGCAGGGTGTGTTCCCGGAGATCAAGTTCGATCTA GCCGGAAAGCCTATAGGGATGGATGTCTGCATCACAACCACTGCCAACACAGATCAAGAAGCCCAGAAACTGATGGCTTTGATGGGGATGCCCTTCAGGG ACGGTGGCGGTGATGCCGATGCCGCTAGTTTGGTAAGGAAGAAGAAATTCAAGGCTCACCATTTTGATGCGAAAGGTAGAGGGAAGTCTACTCGAAGACG TTAA
AA sequence Show only first row Show all	>Lus10033169 pacid=23178081 polypeptide=Lus10033169 locus=Lus10033169.g ID=Lus10033169.BGIv1.0 annot-version=v1.0 MPRDWTQVVNDLVRIACQRPVKTRAKNSVATFKIREGQPLGIAVTLRGAVMWAFLDRLINLGLPRTRDFQGLNPNSFDGHGNYSVGIREQGVFPEIKFDL AGKPIGMDVCITTTANTDQEAQKLMALMGMPFRDGGGDADAASLVRKKKFKAHHFDAKGRGKSTRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01310			Ribosomal L5P family protein (...		Lus10033169 [exp]	0	1
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10017351 [exp]	3.2	0.8312
AT1G06330			Heavy metal transport/detoxifi...		Lus10028331 [exp]	5.5	0.8168
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10009705 [exp]	5.9	0.8391
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006310 [exp]	11.6	0.8225
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10014730 [exp]	16.1	0.7978
AT4G31880			unknown protein		Lus10002307 [exp]	17.2	0.8172
AT4G38380			MATE efflux family protein (.1...		Lus10023944 [exp]	17.9	0.7917
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10011662 [exp]	20.6	0.8073
AT3G47800			Galactose mutarotase-like supe...		Lus10024242 [exp]	20.8	0.7661
AT3G48540			Cytidine/deoxycytidylate deami...		Lus10016755 [exp]	28.7	0.7006

Compare expression of checked genes

Lus10033169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.