Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31500 429 / 1e-146 SUR2, RNT1, RED1, ATR4, CYP83B1 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) AT3G26310 394 / 7e-133 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT3G26330 394 / 8e-133 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26300 392 / 6e-132 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26320 389 / 8e-131 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT4G13770 385 / 6e-129 REF2, CYP83A1 REDUCED EPIDERMAL FLUORESCENCE 2, "cytochrome P450, family 83, subfamily A, polypeptide 1", cytochrome P450, family 83, subfamily A, polypeptide 1 (.1) AT3G26210 384 / 6e-129 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT5G57260 369 / 1e-122 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT5G25120 368 / 1e-122 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT5G25140 365 / 2e-121 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033172 [exp] 630 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10024315 [exp] 618 / 0 AT4G31500 540 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034505 [exp] 600 / 0 AT4G31500 507 / 7e-177 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10004517 [exp] 593 / 0 AT4G31500 489 / 6e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10010066 [exp] 568 / 0 AT4G31500 487 / 3e-169 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10034502 [exp] 541 / 0 AT4G31500 477 / 1e-166 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012399 [exp] 521 / 0 AT4G31500 516 / 2e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012400 [exp] 513 / 4e-179 AT4G31500 458 / 8e-158 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Lus10012395 [exp] 479 / 1e-165 AT4G31500 492 / 4e-171 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G025300 [exp] 540 / 0 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 539 / 0 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025350 [exp] 534 / 0 AT4G31500 514 / 7e-180 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025500 [exp] 531 / 0 AT4G31500 502 / 6e-175 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025800 [exp] 523 / 0 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 521 / 0 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026300 [exp] 508 / 2e-177 AT4G31500 474 / 4e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026100 [exp] 492 / 2e-171 AT4G31500 472 / 9e-164 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.015G086000 [exp] 385 / 3e-129 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.008G184000 [exp] 384 / 8e-129 AT3G26320 535 / 0.0 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10033173 pacid=23178061 polypeptide=Lus10033173 locus=Lus10033173.g ID=Lus10033173.BGIv1.0 annot-version=v1.0 ATGTCATCAATTGTCTACTTTCTCCTAGCTCTTCCCATCTTCATCTTCTTCATGTTCCTTCATCACAAGAACAAACCCAAAAAAAGTTCTCATCTCCCAC CTGGCCCTCCTTCTCTTCCATTCCTAGGAAACTTACTCGACATCAACCCATCTGCCCCGCATCTCTCCCTATATCAACTTTCCGAAAAATACGGACCACT GATGTCCATAAAACAGGGTCGCCTTCGAGTTCTTGTAGTGTCCTCCGCGAATATGGCTCGGGAAGTTATGAGAACTTACGACCATATCTTTTGTAACAGA CCATCCTCAATCGGCCCAAAGAGGCTGTCTTATAATTACCGAGACATATCATTTGCACCTTACGGTACTTACTGGAGAGAGATGAGGAAGATATGTGTTG TTCATCTTTTCAACTCAAATAAGGCCCAAACCTATTGTCCAATTAGAGAGCATGAGATTTCCAAAATGATTGAAGATATTTCTAGATCGGCCTCTTCTTC CGGTGAACGACGGCCTTTTAATCTGTCCAAGGCCATGTCGTCGTTGACGAGTAAAATTGTGTGCCGGGTGGCCTTTACGAAGAGCTTTGAGGAAGAAGGA GAACTTGAGTTGTTGCTTACAGAAGCTGAGAAAATGTTCACGGCCTTGTTTTTCTCGGACCATTATCCTTTGTTGGGTTTTGTTGATAGGCTGACTGGCT TGATGGGTCGGCTTGAAAAGACATTCAAAGGGTTCGATGCTTTTTATCAAAAGATCATTGATCAACATATTGATCCCAACAGAGTGAAGCCAGAGCAAGA AGATGTATTGGATGTTTTGCTTCGGATTAAGGAGGAAGGCTCTACTAAAGTCCAACTCACATTCGACCACATCAAAGCTCTCATCATGGACATATTCTTA GCAGGAACAGACACAAGTGCAGCAACAGTAATATGGGCAATGACATACTTAATGAGGAACCCTATACAAATGAAGAAAGCTCAAGATGAAGTTAGGCAAG TTTTTGGAAAACAGATCGGGTTCTTTAACGAGGAACACATTCACCAACTGCCTTACCTAAAAGCTGTGGTAAAAGAGACGATGAGACTACAACCCGCAGT TCCACTATTACTTCCAAGGCAGTCAACTCAAGAATGTGTTGATTTAGGCGGCTACAAAATACCAGCCAACACTTTGGTTTACGTCAATGCGTATGCCATC GGTAGGGATGTCGAAGCCTGGGGAGAGAATCCAGAGGAATTTAAGCCAGAGAGATTCATAGTGGGGACTAAGTCAACTGTTGATGTGAAAGGCTTGGATT TTGAACTGATACCATTTGGAGCTGGAAGAAGGATGTGTCCTGGGATCCATATGGGTCTCGCAAATGTTGAGGTTTGTTTGGCTAATTTGCTATGTGGGTT TGACTGGGAGATGCCTACTGGAATGAGGAGTGAAGACTTGGATATGGAGGTCTTGCCTGGCCTTACCATGCAGAAGAAGAATGATCTTTCTCTGATAGCT AACAAGTATACGCATAAGGAAGTATTATATGCTTAG
AA sequence Show only first row Show all	>Lus10033173 pacid=23178061 polypeptide=Lus10033173 locus=Lus10033173.g ID=Lus10033173.BGIv1.0 annot-version=v1.0 MSSIVYFLLALPIFIFFMFLHHKNKPKKSSHLPPGPPSLPFLGNLLDINPSAPHLSLYQLSEKYGPLMSIKQGRLRVLVVSSANMAREVMRTYDHIFCNR PSSIGPKRLSYNYRDISFAPYGTYWREMRKICVVHLFNSNKAQTYCPIREHEISKMIEDISRSASSSGERRPFNLSKAMSSLTSKIVCRVAFTKSFEEEG ELELLLTEAEKMFTALFFSDHYPLLGFVDRLTGLMGRLEKTFKGFDAFYQKIIDQHIDPNRVKPEQEDVLDVLLRIKEEGSTKVQLTFDHIKALIMDIFL AGTDTSAATVIWAMTYLMRNPIQMKKAQDEVRQVFGKQIGFFNEEHIHQLPYLKAVVKETMRLQPAVPLLLPRQSTQECVDLGGYKIPANTLVYVNAYAI GRDVEAWGENPEEFKPERFIVGTKSTVDVKGLDFELIPFGAGRRMCPGIHMGLANVEVCLANLLCGFDWEMPTGMRSEDLDMEVLPGLTMQKKNDLSLIA NKYTHKEVLYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033173 [exp]	0	1
					Lus10022893 [exp]	5.7	0.7222
AT3G05950			RmlC-like cupins superfamily p...		Lus10035278 [exp]	8.7	0.7047
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10013014 [exp]	10.5	0.7015
AT1G72490			unknown protein		Lus10013160 [exp]	15.0	0.6934
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10026535 [exp]	22.6	0.6996
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008706 [exp]	33.1	0.6594
AT5G45310			unknown protein		Lus10022973 [exp]	34.4	0.6395
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	39.1	0.6341
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	39.5	0.6232
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	39.9	0.6232

Compare expression of checked genes

Lus10033173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.