Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64230 257 / 5e-81 unknown protein AT3G19920 144 / 4e-38 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010617 [exp] 650 / 0 AT5G64230 294 / 3e-97 unknown protein Lus10010181 [exp] 149 / 2e-40 AT3G19920 311 / 5e-104 unknown protein Lus10017384 [exp] 149 / 2e-39 AT3G19920 327 / 8e-108 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053200 [exp] 362 / 9e-122 AT5G64230 244 / 1e-77 unknown protein Potri.007G073600 [exp] 84 / 1e-17 AT3G19920 119 / 9e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033177 pacid=23178033 polypeptide=Lus10033177 locus=Lus10033177.g ID=Lus10033177.BGIv1.0 annot-version=v1.0 ATGACGTTGGTCCAACTTTCTCTCCAAGTGGGCGGTTTTGGGCGGGTTTCGACGTGTTTTGGACTGGGTCGAGCGGTTTATTGGACAAAAACCCAGCTCA GTCCGTGGGTTGCTTATTACCGATTTTGTGGGACTCCCGGCCCGCTTCCTCTGATGGGTCGCTGTTTTACCGGGCTGACTCGTCGGGCCGGGTTGGGTCT GACAACACAGATATATATCATGTACCTTGGAATTTTCAACCAGTTACCGATTGTCACTAAAACGGTAAACAGTAAAAACCCATTTAGAGCAGAGCTGGGC TTCAAAACGCCGAAAATACTACAGACTACAGAGACCACGAATATTCTATCGGGGCCGCTGAACGCGCCATTCTTCTTCCCATTCTCCGCCGCCATCTGTC TAGAGGACATCATGGACGGCTCTCCGGCCAACGTCGCACCTTTGATTCTCAACCTGTTCACCACTCTGTTTATCCACGCCGACAAAACCTTTCTCCAATT AGCCAACAAGTACAAGATCCTCGAGCTGCTCCGTCACGTCCTCGTTACTTCTTTCATCTTCATCCTTGGATTCATCCCATCTCTGTTTCCGCTTAAGCCC CCCAAGAAGAAGGAGGTTTCTACTCAGAAGCCTCCGTTCCGTGATTCATCTGCAGAAGGCGGCGATGGCGGGGATACTAGTATCGCTCGAGCGCTCACGC AGCTCTTGACGATCGCTAATGAAATTCCCGTGAGTTCTCGCAAGTACGAGATAGTCCGATCTCTGGCGGAGAAGATGATCGACGACAATCATCGCGAGAA CGTCGAAGCTCTCAACGAGATCAACCGTACGGTTCTCTCGGCTGCTTTTACAAGGTCGCTCGCCCAACTTGAGGCTGCTTTTGTCGAACTAGGGTTTGAA AACAGTGGAAGCGATGGAGCTGGGCAGGTTGTCTTGAACAAATTGAGCCGAGTTGTGAAATCGGTTCGGTCGATTGGGTATGGGAGCTGGGCGTTAACCG GGGGGAAGGAGAATGATGACGTCGACCGTTCGAATTGCGCGGCAGAGAAAGTAGCTGCGGAGCTGCTGTGGCTGGCTCAGAAATTGATGGATTGTGGGTG TGCGGATGAAGCTGTTTCGAAGTGGGCAATGGCGTCTAAGTTAGCCTGGCTTTCTCTTTCTGCCGAGCCCCGGCTGCAGGGCTCGTTGGTGAAAGTCTCA GCATTTCTCTTCAAGCATGCCAAAGACTTGGGGTTGGAGGAGATGGACGTGAGCCAGAAAGTGCAGTGGCGTCGGACAAAGCTGGGGATGCTGATGTCGT GGCTGCCATTGCTGTGCAGAGCTACGTCAGGCGTTGATGTTCCGGTGCTGAGTAGAGAGGAGAGGGCAGAATTGGAGAGGGTGCTTGAAGAGATGGTGGA GATATTGGAGGTAAAAGAGAAGGAGCAAGTGTTGTTCCTGTGGTTGCAGCACTTCACCCACAGCCCGTCTTCGGATTGGCCTAACCTCCATTCCTCTTAC TCACGCTGGTGCAATGCTTCTCGTCGGCTCTTGGTCCTCAAGTGA
AA sequence Show only first row Show all	>Lus10033177 pacid=23178033 polypeptide=Lus10033177 locus=Lus10033177.g ID=Lus10033177.BGIv1.0 annot-version=v1.0 MTLVQLSLQVGGFGRVSTCFGLGRAVYWTKTQLSPWVAYYRFCGTPGPLPLMGRCFTGLTRRAGLGLTTQIYIMYLGIFNQLPIVTKTVNSKNPFRAELG FKTPKILQTTETTNILSGPLNAPFFFPFSAAICLEDIMDGSPANVAPLILNLFTTLFIHADKTFLQLANKYKILELLRHVLVTSFIFILGFIPSLFPLKP PKKKEVSTQKPPFRDSSAEGGDGGDTSIARALTQLLTIANEIPVSSRKYEIVRSLAEKMIDDNHRENVEALNEINRTVLSAAFTRSLAQLEAAFVELGFE NSGSDGAGQVVLNKLSRVVKSVRSIGYGSWALTGGKENDDVDRSNCAAEKVAAELLWLAQKLMDCGCADEAVSKWAMASKLAWLSLSAEPRLQGSLVKVS AFLFKHAKDLGLEEMDVSQKVQWRRTKLGMLMSWLPLLCRATSGVDVPVLSREERAELERVLEEMVEILEVKEKEQVLFLWLQHFTHSPSSDWPNLHSSY SRWCNASRRLLVLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64230			unknown protein		Lus10033177 [exp]	0	1
AT5G64230			unknown protein		Lus10010617 [exp]	1.0	0.9243
AT4G22240			Plastid-lipid associated prote...		Lus10001099 [exp]	1.4	0.8825
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10015178 [exp]	1.7	0.8695
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10021801 [exp]	2.0	0.8675
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	5.7	0.8381
AT4G08455			BTB/POZ domain-containing prot...		Lus10042763 [exp]	7.1	0.8057
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Lus10031630 [exp]	7.3	0.8377
AT3G01170			Ribosomal protein L34e superfa...		Lus10005234 [exp]	8.1	0.8389
AT5G27280			Zim17-type zinc finger protein...		Lus10021838 [exp]	8.5	0.7881
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10020827 [exp]	8.7	0.8484

Compare expression of checked genes

Lus10033177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.