Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36210 508 / 8e-173 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) AT2G18100 480 / 3e-162 Protein of unknown function (DUF726) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024307 [exp] 847 / 0 AT4G36210 608 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10033916 [exp] 614 / 0 AT2G18100 416 / 5e-138 Protein of unknown function (DUF726) (.1) Lus10028363 [exp] 498 / 4e-169 AT4G36210 813 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10010626 [exp] 490 / 1e-168 AT4G36210 376 / 2e-125 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3) Lus10041814 [exp] 449 / 8e-150 AT4G36210 752 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G016100 [exp] 473 / 3e-159 AT4G36210 657 / 0.0 Protein of unknown function (DUF726) (.1), Protein of unknown function (DUF726) (.2), Protein of unknown function (DUF726) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05277 [flax] [poplar] DUF726 Protein of unknown function (DUF726)
Representative CDS sequence Show only first row Show all	>Lus10033181 pacid=23178071 polypeptide=Lus10033181 locus=Lus10033181.g ID=Lus10033181.BGIv1.0 annot-version=v1.0 ATGGAAGCAAACATTTTGACACCAAGACAGAAATATGCAGGGGCGGCTCTGTTCGCACTTGCTCTTCACCAATCTCAAACCCACCAGACAAATCCATCAA ACCCTCTTCTCTCCCTTGATCTTGAGCCCATCGGACAAGGCGATGCTACCACCACCACCACCACCAATATTTCTTCCGTCAAGGATAAGCCTCAGCTCTG GATTCACCAAGACTCCGGTTTACTCCTTCCCATTCTTAGCTTCTTGGGAGTGGAGCTTAAAGCATGGGACGGGCTGAAGGAGACTGCTGGATCTTCTTCC CAGCTAAGACATCACATTGGATCCTACATGAAATTGTTATCAGAAGAGAAGGATGGGTCAACAGAGAGTCTGCAAAAGGAACAAGCCTTAACCAGGAACG TTGACGCCACTGCACAGAGCATGGACAATGCCCCTTCTTCCGCTGGCGATTTAAAGATGCAGCAAAGCGGCAACGCAGCGATGGGAGTGGAAGCTGTGGG CCCAGCGAATGCTTTGGTGAAGAAAGGTGTTGTGGGTGCCGAAATGTTGGCTATGGAAGAAGTCACAGTTGTTAGCTACCAGAGGAAAATAACTCTTCTC TACGAGTTACTCTCAGCTTGCCTTGCCGACAGCGTAAAAGATAACAGCTCCTTCTTCAAACAGAGACAAGGCTACGATGCTCGCCACCGTGTTGCTCTCA GGCTGCTCTCTACCTGGCTGGCCATCAATTGGACTGAAATTGAAGCAATGGAGTCCATGGTTTCTTGCTCTCTCATGAAGTTGCTCTCCAACTCTAACCA ACAAGCTGGTGATAACCAAATCACGGAAGCCACGTGGGATAAATACAAGCGTGGTGGCATGGTCGGCGCCGCAGCTCTCACCGGCGGAGCCCTTATGGCG GCAACCGGCGGGCTTGCGGCTCCAGCAATAGCACATGGAGTGGCAGCACTTGCGCCAGCAATTGGAGGGGCGTTATCGAGTACTAGTGGATCAGTGGCTG TTGCTGCTTCTTTTGGAGCAGCTGGAATGAGTCTAACGGGGGGCAAGATGGCCAAAAGAGTAGGAGGACTCGAGGAATTCGAGATTGCATCTCATGGAGA CAGCACCAATCAAGGCCGGCTAGGAGTGGAAATCTTTATCAATGGGTACATCCTTACGGACTCTGATTTCGCAAAGCCATACGCTACTATTAACGATAAT ATGGAGAGGTATATCGTGAGGTGGGAAACCAAGAATTTGATGGAACTCAGCTCTGCAGTAGAGGACTGGCTTTCTTCAAAGGTTGCAATGGAGATGATGA AACAAGGTGCAATGTTGACAGTATTGAGTACTTTAGTTGTGGCATTAGCTCTGCCGGCTGCAATGTTGGGAGCTACTGAACTCATTGACACCAAATGGGC TGTCGCTATTGATAGAGCTGATAAAGCGGGACAGATGCTTGCTGAAGTGTTGATGAAGGGAATGCATGGCAACAGACCTGTCACGCTCATAGGCAACTCT CTTGGAGCTCGATCAATTTTCAAGTGCCTTCAGCATCTAGCTGACTCGACCGGAGACAACGAAGGATTGGTGGAAAGAGTGGTGCTGATAGGGGCACCAG TTGCTATACAAGGTGAAAAATGGCAAGTGGCTAGAAAGATGGTGGCTGGAAGATTTGTGAATGTGTACTCAACAAATGATTGGACACTGGGTGTCACTTT CCGAGCTAGTTTGGTATCCACTGGATTGGCTGGGATTCAACCTGTTGATGTTCCTGGGATTGAGAATATTGATGTAACAGAGCTGATTCAAAGACACGAC ATGTATCTGGCCAAGACAAAGGAAATCATGGAATTGATTGAACTTGAAAGTTGCTACTCTGTTCCTAACAAAACTTGCACCAAGGCCCCCAGACCCACCT AG
AA sequence Show only first row Show all	>Lus10033181 pacid=23178071 polypeptide=Lus10033181 locus=Lus10033181.g ID=Lus10033181.BGIv1.0 annot-version=v1.0 MEANILTPRQKYAGAALFALALHQSQTHQTNPSNPLLSLDLEPIGQGDATTTTTTNISSVKDKPQLWIHQDSGLLLPILSFLGVELKAWDGLKETAGSSS QLRHHIGSYMKLLSEEKDGSTESLQKEQALTRNVDATAQSMDNAPSSAGDLKMQQSGNAAMGVEAVGPANALVKKGVVGAEMLAMEEVTVVSYQRKITLL YELLSACLADSVKDNSSFFKQRQGYDARHRVALRLLSTWLAINWTEIEAMESMVSCSLMKLLSNSNQQAGDNQITEATWDKYKRGGMVGAAALTGGALMA ATGGLAAPAIAHGVAALAPAIGGALSSTSGSVAVAASFGAAGMSLTGGKMAKRVGGLEEFEIASHGDSTNQGRLGVEIFINGYILTDSDFAKPYATINDN MERYIVRWETKNLMELSSAVEDWLSSKVAMEMMKQGAMLTVLSTLVVALALPAAMLGATELIDTKWAVAIDRADKAGQMLAEVLMKGMHGNRPVTLIGNS LGARSIFKCLQHLADSTGDNEGLVERVVLIGAPVAIQGEKWQVARKMVAGRFVNVYSTNDWTLGVTFRASLVSTGLAGIQPVDVPGIENIDVTELIQRHD MYLAKTKEIMELIELESCYSVPNKTCTKAPRPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36210			Protein of unknown function (D...		Lus10033181 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Lus10008319 [exp]	1.0	0.8698
					Lus10006529 [exp]	7.3	0.8380
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	9.0	0.8380
					Lus10035557 [exp]	10.4	0.8380
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	11.6	0.8380
					Lus10005297 [exp]	12.7	0.8380
					Lus10013260 [exp]	13.7	0.8380
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	14.7	0.8380
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Lus10014134 [exp]	15.3	0.8188
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041912 [exp]	15.5	0.8373

Compare expression of checked genes

Lus10033181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.