Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05150 1192 / 0 Calcium-binding tetratricopeptide family protein (.1) AT2G32450 1187 / 0 Calcium-binding tetratricopeptide family protein (.1) AT3G04240 73 / 6e-13 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 60 / 5e-09 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G56290 50 / 5e-06 EMB2790, PEX5, ATPEX5 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) AT4G12400 47 / 5e-05 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT4G37460 47 / 8e-05 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G54010 46 / 0.0001 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT1G66400 42 / 0.0004 CML23 calmodulin like 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010627 [exp] 1277 / 0 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10030122 [exp] 94 / 6e-23 AT1G05150 91 / 3e-23 Calcium-binding tetratricopeptide family protein (.1) Lus10003576 [exp] 81 / 2e-15 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038571 [exp] 71 / 5e-15 AT2G32450 62 / 2e-13 Calcium-binding tetratricopeptide family protein (.1) Lus10004779 [exp] 76 / 1e-13 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 75 / 2e-13 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021336 [exp] 66 / 1e-10 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 55 / 2e-07 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027124 [exp] 50 / 1e-05 AT5G56290 1003 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G234900 [exp] 1261 / 0 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.002G027900 [exp] 1261 / 0 AT1G05150 1226 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.019G025600 [exp] 73 / 7e-13 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G051400 [exp] 69 / 1e-11 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 68 / 2e-11 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 59 / 1e-08 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G473100 [exp] 49 / 1e-05 AT5G56290 978 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.011G170000 [exp] 49 / 2e-05 AT5G56290 1046 / 0.0 EMBRYO DEFECTIVE 2790, ARABIDOPSIS PEROXIN 5, peroxin 5 (.1) Potri.001G119500 [exp] 47 / 7e-05 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.018G100700 [exp] 45 / 8e-05 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10033182 pacid=23178070 polypeptide=Lus10033182 locus=Lus10033182.g ID=Lus10033182.BGIv1.0 annot-version=v1.0 ATGGCCACCAGAGGGAGCAGATCCGAGAAGGTCAAGAGGATTTTCCAGCAATTCGACGGGAATCGTGACGGCGGCCTCAACAGGGACGAAATGGCCACTC TCGTCGTCGCCGTTAACCCTAGGGTCAAATTCAGCCACGAGCAAATTAACGCCATTCTCGACGAAGTCTTCCGTACCTACGCCGAGTTCATCGACACCGA CAAAGGCTTGACTTACGAAGGCCTTTTGAGGACCTACGACGACGGTGCCGGCGACGTTGATCGCGACTTTGACGCCCTGGAGCTCGAGCTCGACGACAAT AAAGGGATCTCGCTCGCGGCGGAGGCATCGTCCTCGATTGCTGACGAAGGAGTGATGGAGGCGCAGAAGAAGCAGCGGACTGCTGCTTGGGCGGTCTCTC CTAACCACGGTATTGTCTTCGACGATACTTGGAAGATAGTTGATGATTTGGAGATTTTAATCAAGAGATTGAAAGCGAAGCAGGCCAAAGATGGGAAATT GAAAGGGGACAATAATAACAACGGTGATGCTTACTCGGACGCTGGCTGGTCAAGGGAATTGGGTCCGTCTTCGGAAATGTCCGATAAGAGGATTATCTGG GAAGAATCTGGTCATGATTATGCCGCTTTTGTGAAGGAATTGGGAACTTTGAGGACTAGAGCTGATGGCGCCAGATCCAGGGAAGAAGCTTTTGATGGGC ATATGGCAATTGGGAGGGTTTTGTATGATAACCATCTGTTTAAGGAAGCATTGGTCAGTTTTAAGAGAGCCTGCGAGCTACAGCCTGTGGATGTGAGACC GCATTTTAGAACTGGGAATTGTCTCTATGTTCTAGGCAGATACAGAGAGGCTAAAGAGGAGTTCTTGTTAGCTCTGGAGGCAGCTGAAGCAGGTGGGAAT CAATGGACGTATTTGCTACCTCAGATTTATGTTAATCTTGGGATTGCTCTGGAAGGTGAAGGTATGATTCTTAGTGCCTGCGAATACTATAGAGAAGCTG CTATTCTATGTCCGACGCATTATAGAGCTCTGAAGCTTTTAGGCAGTGCTCTTTTTGGGGTAGGAGAGTACAGGGCTGCTGTTAAGACCTTAGAAGAGGC TATTTATTTGAAACCTGACTATGCCGATGCACATTGCGATTTAGCCTCTGCTTTGCATGCAATGGGGGAGGATGAGAAGGCAATCGAGGTATTTCAGAAA GCTATTGACTTGAAACCTGGTCATGTGGATGCTCTGTACAATTTGGGTGGGCTCTACATGGACTTAGGTAGGTTTCAGAGGGCTTCAGAGATGTATACCA GGGTGCTGGCTGTATGGCCAAACCATTGGCGAGCTCAGCTGAATAAGGCTGTCTCGTTATTGGGTGCTGGAGAAACTGAAGAAGCTAAGGGAGCTCTCGA AGAAGCTCTTAAAATGACAAATAGGGTTGAGTTGCATGATGCAATATCTCATATGAAGCAGCTGCAGAAGAAGAAAGTGAAGCCCAATGGAGAGAGACCC TTTGTCGCTGTTGAACCCTCAAAGTTCAAAACTGTAGGGGAGAAAACTACACAGAGGCAGGACCTGGCAAATGCCCTTCAAATAAGGACTTTCCAGAGGA TCACCAGGCTGAATCGTTGTGATGTGGAACTTTTGAAGAAGGAAATGAGAGATAATGATGTACCTGTCTCCTATTCAGGTGATGGTGTTCCTGGGAAGTC CATCCGCAAACCTAACTTGGAGGAGATTTTACGGAAGTTGCTTAATTTCCTGAAGCCTGAGATATTCCAGGGAGCTGTCAAAGGAATAAACGAGAGAATC CTGTCTGTTCTGGACGAATCGGGTTCAGGAAGGGTTGATCTTGGTATGTTCTTTGCTGTCCTTGCACCCCTTTGCAGCGGTGCCCCTGAGAAGAGAAAAC GCGTTGCCTTTGATGCACTTCTATGGCGGCCTGTAAATGAAGGAGGTTCTCAGATTAAGAGGGTTGATGCTGTTGGGTACATAAAGTTGTTAAGAGCCAT ATATACACCATCTCCTGGAATCAGCGAAATCCTCGAGGTTCACGGAAAAGCTGATTCCTCCATGGTATCTTTTAACGAGTTTCTAGTAATGTTTGACGAT AGAGATTGGGGATTTGGTATCTTGTCGACTCTATTAAAGCTCGAAAGTGGGGACAGGAACCGGCATGGTTCGAGGGTGTGCTCAGTTTGCCGATACCCCA TAATTGGTTCTCGTTTCAAGGAGATGAAATTGAATTTCAGTCTGTGTAGTCAGTGCTACAGCGAAGGAAAAGTACCATCTTCGTGGTCAAGGCAGGAAGA ATACAAGTTGAAAGAGTATGGAAGTGAATCAGAAGCAAGGAAGGATAAATGTATGTGCTTTCCTCTAAATTCACATGAAGAGTGA
AA sequence Show only first row Show all	>Lus10033182 pacid=23178070 polypeptide=Lus10033182 locus=Lus10033182.g ID=Lus10033182.BGIv1.0 annot-version=v1.0 MATRGSRSEKVKRIFQQFDGNRDGGLNRDEMATLVVAVNPRVKFSHEQINAILDEVFRTYAEFIDTDKGLTYEGLLRTYDDGAGDVDRDFDALELELDDN KGISLAAEASSSIADEGVMEAQKKQRTAAWAVSPNHGIVFDDTWKIVDDLEILIKRLKAKQAKDGKLKGDNNNNGDAYSDAGWSRELGPSSEMSDKRIIW EESGHDYAAFVKELGTLRTRADGARSREEAFDGHMAIGRVLYDNHLFKEALVSFKRACELQPVDVRPHFRTGNCLYVLGRYREAKEEFLLALEAAEAGGN QWTYLLPQIYVNLGIALEGEGMILSACEYYREAAILCPTHYRALKLLGSALFGVGEYRAAVKTLEEAIYLKPDYADAHCDLASALHAMGEDEKAIEVFQK AIDLKPGHVDALYNLGGLYMDLGRFQRASEMYTRVLAVWPNHWRAQLNKAVSLLGAGETEEAKGALEEALKMTNRVELHDAISHMKQLQKKKVKPNGERP FVAVEPSKFKTVGEKTTQRQDLANALQIRTFQRITRLNRCDVELLKKEMRDNDVPVSYSGDGVPGKSIRKPNLEEILRKLLNFLKPEIFQGAVKGINERI LSVLDESGSGRVDLGMFFAVLAPLCSGAPEKRKRVAFDALLWRPVNEGGSQIKRVDAVGYIKLLRAIYTPSPGISEILEVHGKADSSMVSFNEFLVMFDD RDWGFGILSTLLKLESGDRNRHGSRVCSVCRYPIIGSRFKEMKLNFSLCSQCYSEGKVPSSWSRQEEYKLKEYGSESEARKDKCMCFPLNSHEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32450			Calcium-binding tetratricopept...		Lus10033182 [exp]	0	1
AT1G43690			ubiquitin interaction motif-co...		Lus10005002 [exp]	1.7	0.9150
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10037140 [exp]	2.0	0.9312
AT4G01400			unknown protein		Lus10002677 [exp]	3.7	0.9188
AT3G19870			unknown protein		Lus10012903 [exp]	4.5	0.9041
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10024002 [exp]	6.5	0.8946
AT2G32450			Calcium-binding tetratricopept...		Lus10010627 [exp]	7.3	0.8711
AT4G01400			unknown protein		Lus10030195 [exp]	8.4	0.8999
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10009539 [exp]	8.5	0.8767
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	8.5	0.8995
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10016184 [exp]	9.5	0.8789

Compare expression of checked genes

Lus10033182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.