Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09910 80 / 6e-19 Rhamnogalacturonate lyase family protein (.1) AT1G09890 79 / 1e-18 Rhamnogalacturonate lyase family protein (.1) AT2G22620 75 / 3e-17 Rhamnogalacturonate lyase family protein (.1.2) AT1G65210 74 / 3e-17 Galactose-binding protein (.1) AT1G09880 74 / 5e-17 Rhamnogalacturonate lyase family protein (.1) AT4G38030 72 / 4e-16 Rhamnogalacturonate lyase family protein (.1) AT4G37950 71 / 5e-16 Rhamnogalacturonate lyase family protein (.1) AT4G24430 69 / 3e-15 Rhamnogalacturonate lyase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029552 [exp] 86 / 5e-21 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10039627 [exp] 85 / 8e-21 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10012720 [exp] 79 / 1e-18 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10019231 [exp] 79 / 2e-18 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10004281 [exp] 78 / 2e-18 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10000684 [exp] 78 / 3e-18 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005979 [exp] 76 / 1e-17 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10028212 [exp] 74 / 8e-17 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030232 [exp] 72 / 3e-16 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218500 [exp] 86 / 3e-21 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 85 / 1e-20 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.002G110100 [exp] 80 / 5e-19 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.005G151500 [exp] 78 / 2e-18 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 77 / 6e-18 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 74 / 6e-17 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 72 / 3e-16 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.011G006200 [exp] 60 / 5e-12 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033183 pacid=23178106 polypeptide=Lus10033183 locus=Lus10033183.g ID=Lus10033183.BGIv1.0 annot-version=v1.0 ATGGCATTGGCTACCGCTACGGACCCCAAAAACTGGGTCTTCAACTATTCGACGGTGAGATATCCAGTGTACATAACTGATCGGGTGGGTATGGATAACG GAATAGCAAGACATGGAATTCACGGGTTGCACTGGATTTACACCATAAACGAGCAGTGGAATGTGCTTCTAAAAGGGAGCAACACTCTTGTTTTGAGGCA ATCCCACGGTATGAGTCCTTTCAACGGCGTCATGTATGATTATCTTTGGTTTGAAGGACCTCCCACTTAG
AA sequence Show only first row Show all	>Lus10033183 pacid=23178106 polypeptide=Lus10033183 locus=Lus10033183.g ID=Lus10033183.BGIv1.0 annot-version=v1.0 MALATATDPKNWVFNYSTVRYPVYITDRVGMDNGIARHGIHGLHWIYTINEQWNVLLKGSNTLVLRQSHGMSPFNGVMYDYLWFEGPPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10033183 [exp]	0	1
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10007618 [exp]	5.1	0.8041
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024062 [exp]	9.1	0.7233
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10028888 [exp]	10.6	0.8319
AT2G39040			Peroxidase superfamily protein...		Lus10041250 [exp]	17.7	0.7798
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025619 [exp]	20.6	0.7463
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10040632 [exp]	21.2	0.7463
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10019100 [exp]	21.8	0.7463
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10023450 [exp]	25.3	0.6993
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10007025 [exp]	26.0	0.7385
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005010 [exp]	28.6	0.7303

Compare expression of checked genes

Lus10033183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.