Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75540 93 / 6e-22 CO LHUS, AtBBX21, STH2 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) AT4G39070 69 / 6e-14 CO B-box zinc finger family protein (.1) AT1G78600 62 / 6e-11 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT1G06040 56 / 3e-09 CO BBX24, STO SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) AT2G31380 51 / 2e-07 CO STH salt tolerance homologue (.1) AT4G10240 46 / 5e-06 CO B-box zinc finger family protein (.1) AT4G15250 43 / 8e-05 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT3G07650 40 / 0.0008 CO COL9 CONSTANS-like 9 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010629 [exp] 296 / 2e-93 AT3G54350 285 / 5e-83 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10028791 [exp] 76 / 2e-16 AT1G75540 206 / 9e-66 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10017495 [exp] 73 / 3e-15 AT1G75540 202 / 2e-64 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10038147 [exp] 61 / 8e-11 AT1G78600 281 / 2e-94 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10042498 [exp] 61 / 9e-11 AT1G78600 274 / 1e-91 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10027041 [exp] 50 / 5e-07 AT1G06040 298 / 1e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10025579 [exp] 50 / 5e-07 AT1G06040 297 / 2e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G234500 [exp] 127 / 8e-35 AT1G75540 185 / 2e-56 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.002G028200 [exp] 124 / 6e-34 AT1G75540 252 / 2e-82 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.004G161000 [exp] 77 / 6e-17 AT4G39070 192 / 6e-62 B-box zinc finger family protein (.1) Potri.009G122000 [exp] 72 / 3e-15 AT4G39070 202 / 1e-65 B-box zinc finger family protein (.1) Potri.011G105400 [exp] 62 / 6e-11 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.001G384000 [exp] 61 / 1e-10 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.017G028301 [exp] 51 / 1e-07 AT1G06040 274 / 3e-93 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.017G028300 [exp] 51 / 1e-07 AT2G31380 273 / 4e-93 salt tolerance homologue (.1) Potri.007G130100 [exp] 51 / 1e-07 AT1G06040 264 / 1e-89 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.017G039301 [exp] 41 / 0.0004 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033184 pacid=23178028 polypeptide=Lus10033184 locus=Lus10033184.g ID=Lus10033184.BGIv1.0 annot-version=v1.0 ATGAAAATCCAGTGCGACGTCTGTAGCAAAGAAGAAGCGGCGGCGGGGGGCGGCGGGCACCGCCGACGAGGCGGCGCTGAAAAACGGGCGTTTGTGTTCT GCCAACAGGACAGAGCAATCCTCTGCCGACATTGCGATGTCTCAATCCACACCACAAACGAATTTACCCGGCAGCACACCAGGTTTCTTCTCACCGGAGT TAAGCTCTCCCCTGATTCCTCTGCCAGCGGAAATTCACCATCTGTGAAAAGGAGCATGTCGCCATCGAGTTGTAACCGTCAGGATGTTCCTACCCCGAAT CTGTTTCCCCAAAGCTTATCTTCTTCGAACAACACAGCAATTAACATGTTGGGGACAGGGGAACGATTTGGTTCTTCAGTTCCGAGCACTATGTCTGATT ACTTGATAGAGATGCTCCCTGGCTGGGAAGTTGACAACTTTCTCGACACATCATCAAACCCTTTTGGTTTCTCAAAGCCAGCCGTTGATCATGGAGGGTT GACTGTCATGGCTAATGGAGGAAGTTACGATCTGTTGAGCTCCTTGTCATCTGAAAGCTCGGGACCGCGGAACCATCATCATCATCATCATCCAGAAATG GGGACGCAAAATGAGTCGAAGGAGACACAGGATGATCAAGTAGGGAATGCCAAACCCAGCAACAGTAGGGTATGGACTATGAATGATGCGTTCACTGTCC CACATATAAGTCCACCATCCCTTGGCTCCAAGAGATCTAGACTCTTCTGGCAGTAG
AA sequence Show only first row Show all	>Lus10033184 pacid=23178028 polypeptide=Lus10033184 locus=Lus10033184.g ID=Lus10033184.BGIv1.0 annot-version=v1.0 MKIQCDVCSKEEAAAGGGGHRRRGGAEKRAFVFCQQDRAILCRHCDVSIHTTNEFTRQHTRFLLTGVKLSPDSSASGNSPSVKRSMSPSSCNRQDVPTPN LFPQSLSSSNNTAINMLGTGERFGSSVPSTMSDYLIEMLPGWEVDNFLDTSSNPFGFSKPAVDHGGLTVMANGGSYDLLSSLSSESSGPRNHHHHHHPEM GTQNESKETQDDQVGNAKPSNSRVWTMNDAFTVPHISPPSLGSKRSRLFWQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10033184 [exp]	0	1
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10016271 [exp]	3.7	0.8726
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	4.1	0.8936
AT5G14360			Ubiquitin-like superfamily pro...		Lus10014884 [exp]	6.0	0.8853
AT2G42760			unknown protein		Lus10005429 [exp]	6.0	0.8877
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10013132 [exp]	7.3	0.8813
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	7.7	0.8480
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10016097 [exp]	8.1	0.8872
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10022776 [exp]	8.7	0.8486
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Lus10033913 [exp]	8.9	0.8277
AT4G14368			Regulator of chromosome conden...		Lus10027273 [exp]	10.8	0.8635

Compare expression of checked genes

Lus10033184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.