Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54350 280 / 7e-83 FHA EMB1967 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) AT1G75530 196 / 6e-54 FHA Forkhead-associated (FHA) domain-containing protein (.1) AT1G60700 133 / 1e-32 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010629 [exp] 1558 / 0 AT3G54350 285 / 5e-83 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10028358 [exp] 210 / 3e-57 AT3G54350 211 / 2e-58 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Lus10041808 [exp] 194 / 5e-52 AT3G54350 191 / 1e-51 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G234300 [exp] 681 / 0 AT3G54350 306 / 3e-92 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.002G028300 [exp] 673 / 0 AT3G54350 333 / 2e-102 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.005G117900 [exp] 252 / 9e-72 AT3G54350 208 / 5e-57 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3) Potri.007G016900 [exp] 246 / 8e-70 AT3G54350 206 / 1e-56 embryo defective 1967, Forkhead-associated (FHA) domain-containing protein (.1), Forkhead-associated (FHA) domain-containing protein (.2), Forkhead-associated (FHA) domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10033185 pacid=23178039 polypeptide=Lus10033185 locus=Lus10033185.g ID=Lus10033185.BGIv1.0 annot-version=v1.0 ATGACTCCCGTGACTCCATGGGATCCAGAGGATGATCTTCTCTTGAAGAATGCTGTTGAGGCAGGTGCTTCCTTGGAGTCTCTTGCTAAAGGTGCAGTGG AGTTCTCTAGAAAATTCTCAATTCGAGAACTTCAAGAGCGTTGGCATTCTCTCCTGTATGATCCCGTCCTGTCGAAAGAAGCTGCTTTGAGGATGATTGA GCTTGAGCATCCCTCAGCTACTATAACCTCAAGGTTTACTAGATGTGGAAATTTAAAAGATAGCAAATCTCTTTCTGGGAAAAGGAAAGCTGAAAGTGTT CGTTCTTGCTACTATGCTTTGCGCAAAAGAATCCGTAATGAGCCATTTGATTCCATGGATTTGAGTTTTCTTATGGGACCTATCGATAACAATTATGGAG GTGAAGATGGCCCTTTACCTGGACCTTGCATGCTTGAAGATCCCATTCCTGATCATTTTGGATTTCAGGAAGCTAATATGGATATGATGCTGACAGAAAT TGGAGTTTGTAATGGTGATCCTGTATTTAATTCAGAATTTCAGAATACAGTTCAAAGAGATTTTCCAATACAGCATGACGATTTACCAAATGACATGGAC AGTGTAATGGCCACTGGCAATGTGACGGTAGTTGAGGAATTTGGCCAACCAGATAGGCTACCTTTGAACAGTAACCAGATACAAGGATGCTCGAATTTTG ATGAAGATGAGGGTTTTGGTTCCCAGACTCTTCAGTGTGGGTCGCCATTTCACAATCTTGAGTACCCATCTCCGCTTCCTGAATTCCCGCTATGGAAATC TGGCACAGGTATGACAGTGGCAACTGAGTCTATTGATATTGGTCTAAGGGGCAAAGAGCTACGTGCTAGGGATGGATTTTCTCTTCCGAGTGATACTGCT AGTAAAGATTCTGATCCATCAGAATATGGTATGGTTCATGGCGACTCAGATATACAAAACGAGGAGCTTAAAGATTCCAGTGCTGGTAGAGATGGTTTTC TGGCTGAACTTTCAAACTCTCTATTTGACTTTACAAATGAAGATGAACATCTGTTTATGAATGTTGATGGAAAAGATGCCATTGATAAGTCACACAAGAT CTATGAGGGCCTTAGTTCCTTGCTGTTGAGTTCACCAAATGAGGTTAATCAAGATGGTTTGTCTGGTGCATTTGAACTGGATATGTCTGCGACTGTGGAT CATCATGAAACTCAGTTGAGTGCAAGTACCCAAGTGTTAGATGAAGATACCAGCTTGCACCGAATACGAGATGCTCTCTGCATGGCTGATAATCAGAGCA TCGATACCCCATCAACTTCAAAGCCTGAGTTTCCAGAACTTACTTGCGACGTTATTTGTGTGTTAAACACAGAAGATCCTGAGGTCCCGTGTAATGATCA TGTTGTTTTTACCCCCAGATCGCGCCGTAGAGCAGCTGCATCTGTACCTCGTCGATCTCAACAACATCCCAAGAAACTCAATTCCCCCATGAAAGAAATG TCCAACAATCAACTAAGTAGCAAAGGGAGCAAGCCATTGAAGACGCCTGGGGATCTAGGAAACTCTCGACAATCACAGACATCCTCTCAGATGATTAGGC CACAAGTGACTCCGGAAGTTAGTCAGCCTCATTCGGTTAGTGATCATGGAGTTATAGTTGAGTTACCGAGAAGTGATTCCTCTAGAAAGGGCACAGTTGT TACTCATGGTAGTTATTGCACAAATAATGGAACGACTAGTCAGATGCATGTTAAGCCGAAGGAAGAAACTATATCGATCGAGATAGCAATGCCTGCTAGC CATATAACGTTAATGGGAAAGCAGCCTCCTGTTTTTAAAGAGACCAGTTCAAATGGTGTTAAGCAAGAAATAGATGCTCCGTCAGGGTTTCCAAATCATC AAGGGTCTATTGCAGCAGTTGAGCCTGTAGATATTTCAACCTCTGAACAAAGAATAAAGAATACGTCTGACCCAGAAGACCTAGTGGTAGAAAGTGATGA TGATGTCCCTTATTTTTCAGACATTGAAGCTATGATACTTGATATGGACTTGGATCCCGAAGACCATGGCCTATTTTCAAATGAGCAAGTCTTAAGATAC CAGCAAGAAGAAACTAAAAGAGCAATCATGCGGCTGGAACAGAGTGCACATGCATGCATGCAAAGAGCCATTGAGTCACATGGAGCTTTTGCTATTCTAT ATGGTCGGCATTCAAAACATTACATAAAGAAGTCCGAGGTTTTACTTGGTAGAGCTACGGACGATGTCATGGTGGACATTGACTTGAGTAGAGAAGGGCG TGCGAATAAGATATCGCGGCGACAGGCAATTATAAGTTTGGAGAAGAAGGGATGTTTCAATGTGAAGAATGTTGGCAAATTTTCCATCTCAGTCAATGAC AGGGAAATTACCAATGGACAGAGTCTAATTCTTACTTCCGGTTGCTTACTCGAGATACGAGGGAAGCAGTTCATATTCGAGATAAACCCAAGCTGTGTTA AGAGGTTTCTAGAAAGCACGACGACGACAACCCAACAACTCTGA
AA sequence Show only first row Show all	>Lus10033185 pacid=23178039 polypeptide=Lus10033185 locus=Lus10033185.g ID=Lus10033185.BGIv1.0 annot-version=v1.0 MTPVTPWDPEDDLLLKNAVEAGASLESLAKGAVEFSRKFSIRELQERWHSLLYDPVLSKEAALRMIELEHPSATITSRFTRCGNLKDSKSLSGKRKAESV RSCYYALRKRIRNEPFDSMDLSFLMGPIDNNYGGEDGPLPGPCMLEDPIPDHFGFQEANMDMMLTEIGVCNGDPVFNSEFQNTVQRDFPIQHDDLPNDMD SVMATGNVTVVEEFGQPDRLPLNSNQIQGCSNFDEDEGFGSQTLQCGSPFHNLEYPSPLPEFPLWKSGTGMTVATESIDIGLRGKELRARDGFSLPSDTA SKDSDPSEYGMVHGDSDIQNEELKDSSAGRDGFLAELSNSLFDFTNEDEHLFMNVDGKDAIDKSHKIYEGLSSLLLSSPNEVNQDGLSGAFELDMSATVD HHETQLSASTQVLDEDTSLHRIRDALCMADNQSIDTPSTSKPEFPELTCDVICVLNTEDPEVPCNDHVVFTPRSRRRAAASVPRRSQQHPKKLNSPMKEM SNNQLSSKGSKPLKTPGDLGNSRQSQTSSQMIRPQVTPEVSQPHSVSDHGVIVELPRSDSSRKGTVVTHGSYCTNNGTTSQMHVKPKEETISIEIAMPAS HITLMGKQPPVFKETSSNGVKQEIDAPSGFPNHQGSIAAVEPVDISTSEQRIKNTSDPEDLVVESDDDVPYFSDIEAMILDMDLDPEDHGLFSNEQVLRY QQEETKRAIMRLEQSAHACMQRAIESHGAFAILYGRHSKHYIKKSEVLLGRATDDVMVDIDLSREGRANKISRRQAIISLEKKGCFNVKNVGKFSISVND REITNGQSLILTSGCLLEIRGKQFIFEINPSCVKRFLESTTTTTQQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	0	1
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10019754 [exp]	2.2	0.8585
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10020306 [exp]	4.5	0.8512
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	5.3	0.8530
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	6.5	0.8809
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Lus10013348 [exp]	6.6	0.8036
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10023999 [exp]	6.7	0.8606
AT3G05670			RING/U-box protein (.1)		Lus10013501 [exp]	7.1	0.7977
AT1G74120			Mitochondrial transcription te...		Lus10021146 [exp]	7.1	0.8342
AT1G06230		GTE4	global transcription factor gr...		Lus10033623 [exp]	7.9	0.8709
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10021805 [exp]	9.9	0.7984

Compare expression of checked genes

Lus10033185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.