Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54340 258 / 2e-87 MADS AP3, ATAP3 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) AT5G20240 130 / 2e-37 MADS PI, PISTILLATA PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 127 / 6e-36 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT4G18960 119 / 5e-33 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT3G58780 117 / 3e-32 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G42830 117 / 5e-32 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT2G45650 117 / 5e-32 MADS AGL6 AGAMOUS-like 6 (.1) AT2G45660 114 / 3e-31 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT5G23260 114 / 5e-31 MADS ABS, TT16, AGL32 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G51870 111 / 4e-30 MADS AGL71 AGAMOUS-like 71 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010630 [exp] 415 / 1e-149 AT3G54340 279 / 1e-95 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10031960 [exp] 415 / 3e-149 AT3G54340 275 / 5e-94 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10029719 [exp] 134 / 2e-38 AT5G20240 221 / 3e-73 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10042749 [exp] 126 / 1e-35 AT5G20240 219 / 2e-72 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10004638 [exp] 124 / 8e-35 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10010184 [exp] 122 / 4e-34 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10017388 [exp] 122 / 7e-34 AT5G23260 220 / 4e-72 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10026678 [exp] 119 / 3e-33 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10007983 [exp] 120 / 7e-33 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G118000 [exp] 243 / 2e-81 AT3G54340 226 / 9e-75 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.002G028400 [exp] 241 / 2e-81 AT3G54340 229 / 7e-77 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.007G017000 [exp] 235 / 1e-78 AT3G54340 208 / 1e-67 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.002G079000 [exp] 135 / 1e-39 AT5G20240 238 / 2e-80 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.005G182200 [exp] 135 / 2e-39 AT5G20240 244 / 2e-82 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.007G073000 [exp] 125 / 3e-35 AT5G23260 256 / 3e-86 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.014G074100 [exp] 121 / 1e-33 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.002G151700 [exp] 120 / 2e-33 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.014G074200 [exp] 120 / 3e-33 AT2G45660 242 / 3e-81 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.012G062300 [exp] 117 / 6e-32 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10033187 pacid=23178051 polypeptide=Lus10033187 locus=Lus10033187.g ID=Lus10033187.BGIv1.0 annot-version=v1.0 ATGGCGAGGGGGAAGATCCAGATCAAGAGGATCGAGAACTCCACCAATCGCCAGGTCACTTACTCCAAGCGCCGCAATGGTCTCTTCAAGAAGGCCAACG AGCTCACCGTCTTATGTGACGCTAAGGTCTCCATCATCATGTTCTCCAGCACCGGCAAGCTTCACGAGTTCATCAGCCCTGCCGCCACAACTAAGGGGAT GTTGGATCAGTACCAGAGAACACTTGGCGTAGACATCTGGACCACGCACTATGAGAAAATGCAAGATCACTTGAAGAAACTGAAAGACGTGAACAGAGAT CTGCGCAAAGAGATACGGCGAAGGATGGGGGAGTGCTTGAACGATCTGGAGTTCGATCAGATGCGAGCTCTTGACATGGAGATGGATAATGCTGTTAAGA TCATCCGCGAGCGCAAGAATCAGGTGATCTTCAATCAGATTGAGAGGCAAAAGAAAATGGTCAGGAATGTGGAAGAAATACACAGAAACCTTCTGCATGC ATTTCAAGAGAGAGAGGAAGATCCGCACTATGGTTTAGTGGATAATGGCGGGGGTTATGAGCCAGCTGTGGTTGGTTTCCCAACAGGGGGTTCTCGAGTT TTCGCTTTAAGGCTAAATCACCACAATCTCCACACTGCCACTACTGCTACTGGATCCGATCTCACCACTTTCCACTTGCTTGAGTGA
AA sequence Show only first row Show all	>Lus10033187 pacid=23178051 polypeptide=Lus10033187 locus=Lus10033187.g ID=Lus10033187.BGIv1.0 annot-version=v1.0 MARGKIQIKRIENSTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEFISPAATTKGMLDQYQRTLGVDIWTTHYEKMQDHLKKLKDVNRD LRKEIRRRMGECLNDLEFDQMRALDMEMDNAVKIIRERKNQVIFNQIERQKKMVRNVEEIHRNLLHAFQEREEDPHYGLVDNGGGYEPAVVGFPTGGSRV FALRLNHHNLHTATTATGSDLTTFHLLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10033187 [exp]	0	1
AT5G06410			DNAJ heat shock N-terminal dom...		Lus10029359 [exp]	2.4	0.7902
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	3.7	0.7958
AT3G17900			unknown protein		Lus10013273 [exp]	4.4	0.8010
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10004807 [exp]	13.9	0.7786
AT4G24630			DHHC-type zinc finger family p...		Lus10028687 [exp]	14.1	0.7483
AT3G22520			unknown protein		Lus10006124 [exp]	16.2	0.7766
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	18.3	0.7619
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Lus10036268 [exp]	19.4	0.7804
AT5G27490			Integral membrane Yip1 family ...		Lus10004473 [exp]	19.4	0.7559
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10040927 [exp]	20.0	0.7557

Compare expression of checked genes

Lus10033187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.