Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75510 352 / 4e-123 Transcription initiation factor IIF, beta subunit (.1) AT3G52270 294 / 3e-100 Transcription initiation factor IIF, beta subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010631 [exp] 579 / 0 AT1G75510 350 / 2e-122 Transcription initiation factor IIF, beta subunit (.1) Lus10040084 [exp] 339 / 1e-117 AT3G52270 322 / 3e-111 Transcription initiation factor IIF, beta subunit (.1) Lus10023502 [exp] 311 / 1e-105 AT3G52270 294 / 4e-99 Transcription initiation factor IIF, beta subunit (.1) Lus10030963 [exp] 305 / 4e-105 AT3G52270 303 / 1e-104 Transcription initiation factor IIF, beta subunit (.1) Lus10040384 [exp] 245 / 4e-81 AT3G52270 226 / 9e-74 Transcription initiation factor IIF, beta subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G028900 [exp] 403 / 3e-143 AT1G75510 346 / 5e-121 Transcription initiation factor IIF, beta subunit (.1) Potri.005G233800 [exp] 400 / 5e-142 AT1G75510 354 / 3e-124 Transcription initiation factor IIF, beta subunit (.1) Potri.010G219800 [exp] 292 / 4e-99 AT3G52270 295 / 1e-100 Transcription initiation factor IIF, beta subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02270 [flax] [poplar] TFIIF_beta TFIIF, beta subunit HTH domain
Representative CDS sequence Show only first row Show all	>Lus10033190 pacid=23178094 polypeptide=Lus10033190 locus=Lus10033190.g ID=Lus10033190.BGIv1.0 annot-version=v1.0 ATGGAGAAAGAGCGGCCACATACTTCCCGGTACAACCGATATAAGCGAGAACATGTGGAGAAGGAAGATGATAGCGGTAACACCATCACATTGGGTGGCG TACTCGAGACGGCGAAGGCTGATAGAGCGGTCTGGCTTATGAAGTGCCCCGTGGCGGTGGCTAGGTCTTGGCAAGCTCACGCCTCTTCCTCCGATTCTCA GCCAGTTGCCAAAGTCGTTGTTTCCCTCGATCCTCTTCAGGCCGATGAATCTCCTCAGTTCAAGATGGAGATGGCAGGCTCCGAAATCGGGAATGCTCCA AAGAGCTATTCTTTAAACATGACCAAAGAGTTCGTTCCTATGTGTATATTTTCTGAGCCAACTTCAGGAGGCAAGGTTTCTGTGGAAGGCAAAGTAGATC ATAAATTTGACCTAAAACCACATGGCGAAAATATTGAAGAGTATGGCCGATTATGCCGTGAGAGGACAAATAAATCAATGGTTAGGAATAGACAAATACA GGTGATAGATGATAACCGGGGCATGAACATGAGACCTATGCCTGGAATGGTTGGCTTGATTTCAACTAATGCCAAGGAGAAAAGGAAGCTTCAGCCAGTT AAGCAAACTGAGGTGAAGAGAACCAGGAGGGACCGTGGAGAACTGGAGGATATTATGTTCAAGTTATTCGAAAGACAGCCTAACTGGGCCCTGAAGCAGC TTGTCCAGGAGACTGATCAACCTGCGCAATTTTTGAAAGAGATTCTGAATGAGCTCTGTGTATACAACAAAAGAGGTTCAAATCAAGGAACCTACGAGCT TAAGCCTGAATACAAGAAAACTGCTGTTCCTGAGGCAGGTGCCGAGTAA
AA sequence Show only first row Show all	>Lus10033190 pacid=23178094 polypeptide=Lus10033190 locus=Lus10033190.g ID=Lus10033190.BGIv1.0 annot-version=v1.0 MEKERPHTSRYNRYKREHVEKEDDSGNTITLGGVLETAKADRAVWLMKCPVAVARSWQAHASSSDSQPVAKVVVSLDPLQADESPQFKMEMAGSEIGNAP KSYSLNMTKEFVPMCIFSEPTSGGKVSVEGKVDHKFDLKPHGENIEEYGRLCRERTNKSMVRNRQIQVIDDNRGMNMRPMPGMVGLISTNAKEKRKLQPV KQTEVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGSNQGTYELKPEYKKTAVPEAGAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75510			Transcription initiation facto...		Lus10033190 [exp]	0	1
AT1G75510			Transcription initiation facto...		Lus10010631 [exp]	3.7	0.9081
AT3G01980			NAD(P)-binding Rossmann-fold s...		Lus10041545 [exp]	4.7	0.9059
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10005298 [exp]	12.1	0.9058
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Lus10032089 [exp]	12.4	0.9015
					Lus10025502 [exp]	15.1	0.9015
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10019983 [exp]	19.3	0.8924
AT2G21120			Protein of unknown function (D...		Lus10012716 [exp]	19.8	0.8895
AT2G45320			unknown protein		Lus10000786 [exp]	21.2	0.8853
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10001365 [exp]	22.2	0.8474
AT4G37030			unknown protein		Lus10011021 [exp]	24.5	0.8701

Compare expression of checked genes

Lus10033190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.