Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75410 305 / 6e-97 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT1G19700 300 / 2e-94 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT2G16400 282 / 2e-88 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G34610 264 / 7e-81 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G35940 219 / 7e-63 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT2G23760 213 / 5e-61 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT4G36870 211 / 2e-59 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G27220 200 / 6e-58 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT1G75430 190 / 1e-55 HD BLH11 BEL1-like homeodomain 11 (.1) AT5G41410 197 / 4e-55 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010633 [exp] 991 / 0 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10017481 [exp] 270 / 7e-82 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10000184 [exp] 270 / 9e-82 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 268 / 5e-81 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10029405 [exp] 239 / 4e-70 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10004201 [exp] 239 / 5e-70 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10013579 [exp] 226 / 3e-66 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10016790 [exp] 195 / 1e-55 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022485 [exp] 196 / 4e-54 AT4G36870 398 / 5e-128 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G031000 [exp] 298 / 2e-92 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.004G159300 [exp] 282 / 3e-86 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 279 / 5e-85 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.006G203000 [exp] 257 / 7e-77 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.016G069700 [exp] 251 / 2e-74 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 245 / 5e-72 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 240 / 4e-70 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.003G131300 [exp] 223 / 2e-64 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.001G100800 [exp] 220 / 3e-63 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.005G232000 [exp] 214 / 5e-63 AT1G75430 308 / 8e-103 BEL1-like homeodomain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10033192 pacid=23178075 polypeptide=Lus10033192 locus=Lus10033192.g ID=Lus10033192.BGIv1.0 annot-version=v1.0 ATGGCTACTTACTATTCAAGTATAGACAACTTGCACACATCTTCATCTTCTTGTGATACCAATCATCTGATTTCTTCTTCTAATTCTGCTTCAATCCATC ATGATCAACAACTACTCCCTCATAATTACCACTCTGACCAATTCGGATCCAGAAACGAGATGATGATGTTCATCCCTCCTATCAACGACCACAACAACGC ACCAGATCAGGTCGTCGATATTCCAAACCTCATCCAAGATTCGGACAGCTTCCACATCCAAGGAGGACTGTCTCTAAGCCTAGGGACACAGATGATGGAG ACTTCATCATCCGTTGTTTCTGTGCCTCCTCCTCCTCCTTCTTCTTCATACGACAACAACAACTATCATCAGTACCTAGTGGAGGCAGAAGATCAGGATC AGCAGCTTATTCATATTAAGATGGAGGGTCATCATCCTATTCCTCCTCCACAATTTTATCAGACGACGTCGACTATGGGGTATGCTAATGTTTCAGTGTT GAATTCTAACTACCTCAAGGTTACCCATGAATTGCTCGATGAAGTTGTCAATGTCAAGTACGCACTCACACATCAAGTACCCGCCGATGATAAATGTTCT GACAAAGAGGGAAATAACGATGGTGCTGCTGAGTCGGGTGTCGAGTCGTCAGCTTCCGAGTTGTCACCATCTGAGAAGCAGGATTTGCAGGCCAAGAAGT CCAAGCTTATGTCCATGGTCGATGAGGTGGACAAGAGATACAAGCAATATTACCACCAAATGCAAGCTTTGATTTCATCAATGGACACGGTGGTGGCTGG GAATGGAGCTGCTAAGGCATATACTTGGCTAGCATTGCATACAATTTCACGTCGTTTCCGCTGCCTTCGCGATGCAATCGAAAACCAGATAGAGGTGATT AGGAAGAAGTTGGGTGAGCAACAAGGAGCTCAGGGGCAAGGAGGTATTCCTCGACTTCGCTATATTGAACAACAGCTAAAGCAAGAAAGAAGTACACTTC ACCAACATTTAGGGGTTATGCGCCACTCTTGGCGGCCACAAAGAGGCCTCCCTGAAAACTCTGTCTCTCTTTTAAGAGCTTGGCTCTTCGAACACTTCCT CAATCCGTATCCAAATGAATCAGAGAAGAACATGCTAGCAAAACAAACAGGGTTGTCGAAAAATCAGGTAGCAAATTGGTTTATAAATGCAAGGGTGAGG CTATGGAAGCCAATGGTGGAGGAGATGTACAAAGAAGAGTGTGGCGGTGGCGAGTCAGATGACAACTCCAACAAATCATCAAACTATAATAATGAGGCCA AGAGAGGTCGTCATTATAATCAACTTCACGATCCAAATTATGATTTGGATGCCAACAACAGTCTACTAGTAGTAGCAGACCATGAACTACAAGACACAGC TGCAGTGACAACATCATCAACAGTGCCAGCTGATCAACTCATTCATTACTTCCACTCAGATCATCTTGATCACGACCAGATCAACGGTCAAGGACAGCTG CATCAGTACGTGGAAGACCAGACACAGAATAGTAGTATGCCGCCACTGAACCTGAATACAGCAGTAGGAGATGGGAGCCTAATGTCTGCTGCTGTTCAAT ACGGTGGCGTTTCAGCGTCTACAGGACTAATAATCCCTCACGTCTCCCTTGCACTGGGATTGCAGCACAATGAAACTGATGATGGGGGCTTGGTCCATGA TGATGATTCCTTCCACCACAGCAGGTTTGGGAACACAGTACATTCGTTCCATGATTTTGTTGTGTCCAAGAACCCTTGCTTCTAG
AA sequence Show only first row Show all	>Lus10033192 pacid=23178075 polypeptide=Lus10033192 locus=Lus10033192.g ID=Lus10033192.BGIv1.0 annot-version=v1.0 MATYYSSIDNLHTSSSSCDTNHLISSSNSASIHHDQQLLPHNYHSDQFGSRNEMMMFIPPINDHNNAPDQVVDIPNLIQDSDSFHIQGGLSLSLGTQMME TSSSVVSVPPPPPSSSYDNNNYHQYLVEAEDQDQQLIHIKMEGHHPIPPPQFYQTTSTMGYANVSVLNSNYLKVTHELLDEVVNVKYALTHQVPADDKCS DKEGNNDGAAESGVESSASELSPSEKQDLQAKKSKLMSMVDEVDKRYKQYYHQMQALISSMDTVVAGNGAAKAYTWLALHTISRRFRCLRDAIENQIEVI RKKLGEQQGAQGQGGIPRLRYIEQQLKQERSTLHQHLGVMRHSWRPQRGLPENSVSLLRAWLFEHFLNPYPNESEKNMLAKQTGLSKNQVANWFINARVR LWKPMVEEMYKEECGGGESDDNSNKSSNYNNEAKRGRHYNQLHDPNYDLDANNSLLVVADHELQDTAAVTTSSTVPADQLIHYFHSDHLDHDQINGQGQL HQYVEDQTQNSSMPPLNLNTAVGDGSLMSAAVQYGGVSASTGLIIPHVSLALGLQHNETDDGGLVHDDDSFHHSRFGNTVHSFHDFVVSKNPCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	0	1
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	1.0	0.9599
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	1.4	0.9121
AT3G07570			Cytochrome b561/ferric reducta...		Lus10001180 [exp]	2.0	0.8797
AT1G07120			unknown protein		Lus10031293 [exp]	4.2	0.8628
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	5.5	0.8443
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10005972 [exp]	6.0	0.8397
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	7.1	0.8965
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032750 [exp]	7.7	0.8306
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10025789 [exp]	7.9	0.8574
AT3G14170			Plant protein of unknown funct...		Lus10008137 [exp]	7.9	0.8547

Compare expression of checked genes

Lus10033192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.