Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35180 218 / 4e-71 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G35170 189 / 8e-60 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT1G45010 188 / 1e-59 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010635 [exp] 354 / 8e-125 AT1G35180 273 / 3e-93 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G231600 [exp] 252 / 1e-84 AT1G35180 307 / 9e-107 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03798 [flax] [poplar] TRAM_LAG1_CLN8 TLC domain
Representative CDS sequence Show only first row Show all	>Lus10033194 pacid=23178062 polypeptide=Lus10033194 locus=Lus10033194.g ID=Lus10033194.BGIv1.0 annot-version=v1.0 ATGGAAAATCAGATCTTGAACATTGTCGCTGGAGGGGTCCTTTGCTGGACGACTGCATTCTTCATAGCAAAGAACACCTTCCCAAAGCGGTCTTTAGAGT TCTGCAACCGTTTGGTCTCAACAAGCCACGCGGCTCTTGCTGTGTCTTTAGCTACCCTCAGTGTTGAAGATTGGACTCGCCCGGTTTCCCCTCTCGCTTC TAATTCTTCCCCATATCAGGCAAGTCAAAGTACAAACTGGAAAATCAGAGCAGAAGTTGTGATAATAAAACAGTTTTTTTTTAATCTTTTCTGTTTAATT GTTGGGCAGATGAAAACGCTGGCAGTGAGCCTTTCGTACATGATATACGATCTGGGTTGTTGCTTGTTCGAGAGAAGAGTTGATATGGCGAATGCAATTC ACCATTTGGTCAGCATTGTTGGAATTGGAGCTGGTCTTGCTTATCACAAGTGTGGAACTGAGATGGTTACTGCTCTGTGGGTGACTGAGATCTCTAGTCC ATTGCTTCACTTGAGAGAGATTCTGAAGGAGCTTGGTTACAGAGACACGCAGCTCAACTTCGCCGCTGATATTGCATTTGCTGCGATATTCTCGTTTGCG AGAATGGGGTTTGGGCCATATCTTACTTACGTGACTCTATCTGCCAATAATCCACTCATCATTAAGGCAATGGCATTGGGGTTACAACTGGTGAGTGCTT TCTGGTTCTACAAAATTGTTAGGATGGTGAGGTACAAGGTTGCCAAATGGTGGTCTTCTTCAAGTACCACCAAAAAGGCGACTTAA
AA sequence Show only first row Show all	>Lus10033194 pacid=23178062 polypeptide=Lus10033194 locus=Lus10033194.g ID=Lus10033194.BGIv1.0 annot-version=v1.0 MENQILNIVAGGVLCWTTAFFIAKNTFPKRSLEFCNRLVSTSHAALAVSLATLSVEDWTRPVSPLASNSSPYQASQSTNWKIRAEVVIIKQFFFNLFCLI VGQMKTLAVSLSYMIYDLGCCLFERRVDMANAIHHLVSIVGIGAGLAYHKCGTEMVTALWVTEISSPLLHLREILKELGYRDTQLNFAADIAFAAIFSFA RMGFGPYLTYVTLSANNPLIIKAMALGLQLVSAFWFYKIVRMVRYKVAKWWSSSSTTKKAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10033194 [exp]	0	1
AT5G22930			Protein of unknown function (D...		Lus10037944 [exp]	2.2	0.7845
AT1G68330			unknown protein		Lus10041430 [exp]	3.2	0.7371
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10010454 [exp]	5.5	0.7606
AT4G29330		DER1	DERLIN-1 (.1)		Lus10034990 [exp]	8.4	0.7650
AT1G53035			unknown protein		Lus10018600 [exp]	9.9	0.7412
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10013344 [exp]	10.0	0.7521
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10020821 [exp]	14.2	0.7448
AT5G62890			Xanthine/uracil permease famil...		Lus10004228 [exp]	14.3	0.7453
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10037169 [exp]	15.7	0.7419
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10011899 [exp]	24.9	0.7474

Compare expression of checked genes

Lus10033194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.