Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04940 341 / 7e-119 AtTic20-I, atTIC20, TIC20 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) AT1G04945 301 / 1e-98 HIT-type Zinc finger family protein (.1.2.3) AT4G03320 160 / 4e-48 AtTic20-IV, TIC20-IV translocon at the inner envelope membrane of chloroplasts 20-IV (.1) AT2G47840 52 / 6e-08 AtTic20-II translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010636 [exp] 516 / 0 AT1G04940 338 / 9e-118 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Lus10039783 [exp] 154 / 3e-45 AT4G03320 263 / 1e-87 translocon at the inner envelope membrane of chloroplasts 20-IV (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G231400 [exp] 358 / 1e-125 AT1G04940 360 / 2e-126 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Potri.002G031800 [exp] 357 / 2e-125 AT1G04940 363 / 1e-127 translocon at the inner envelope membrane of chloroplasts 20-I, translocon at the inner envelope membrane of chloroplasts 20 (.1) Potri.019G108800 [exp] 169 / 3e-51 AT4G03320 283 / 2e-95 translocon at the inner envelope membrane of chloroplasts 20-IV (.1) Potri.013G084900 [exp] 42 / 0.0001 AT2G47840 196 / 2e-63 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09685 [flax] [poplar] DUF4870 Domain of unknown function (DUF4870)
Representative CDS sequence Show only first row Show all	>Lus10033195 pacid=23178060 polypeptide=Lus10033195 locus=Lus10033195.g ID=Lus10033195.BGIv1.0 annot-version=v1.0 ATGATTATAAACGGATGCACGTTACCTTCCGGGTATGGAATTATGAATTTCAGAGCAAGTCAATTCCCTCATGGTAGATTGGTTTCTGCTCGCATTCCTT CTAGCCTATCACCATTAACTATTAGGAGTTCTTGGCAGGAGCCCAAATCTTGTTTCTCGATACCGGCATGTGGGTCTTTCCATAACCTCGCTGCTGTATC TGAACGAGGTGAATTACTACACATGATTCCATATCTACCAAGAAAGCGTGGATCTTATCTCCCTGCTCGGGCGTCCAAGGATGTCCCTTACAGTTTTCGG TTCCCTCCAATGACAAAGAAGCCAAGGTGGTGGTGGAGGACGCTAGCATGCCTCCCTTATTTGATGCCTTTCCATGAAACCTGGATGTATGCTCAGACAG CATATAACTTGCACCCATTCCTTGAACAGTTTGAGTATCTTACATACCCGTTCCTCAGAGCTATTGGTAGCTTGCCAGGCTGGTTCTTGATGGCCTATTT CTTCTGCGCCTATCTTGGAGTTGTCAGGAGAAAGGAATGGCCTCATTTCTTCAGATTTCATGTGGTGACCGGCATGTTGCTCGAGATTGCCCTGCAGGTG ATTGGAACGGTGAGTCGTTGGATGCCACAAGGCTTATACTGGGGGAAGCTCGGGATGCACTTTTGGACGGCCCTGGCGTTTGCTCACCTTTTCACTGTCC TGGAATGCATAAGGTGTGCTATCTGTGGTATGTATGCTGATGTCCCTTTTGTCTCTGATGCTGCATACATTCAGATTCCATATGACTAA
AA sequence Show only first row Show all	>Lus10033195 pacid=23178060 polypeptide=Lus10033195 locus=Lus10033195.g ID=Lus10033195.BGIv1.0 annot-version=v1.0 MIINGCTLPSGYGIMNFRASQFPHGRLVSARIPSSLSPLTIRSSWQEPKSCFSIPACGSFHNLAAVSERGELLHMIPYLPRKRGSYLPARASKDVPYSFR FPPMTKKPRWWWRTLACLPYLMPFHETWMYAQTAYNLHPFLEQFEYLTYPFLRAIGSLPGWFLMAYFFCAYLGVVRRKEWPHFFRFHVVTGMLLEIALQV IGTVSRWMPQGLYWGKLGMHFWTALAFAHLFTVLECIRCAICGMYADVPFVSDAAYIQIPYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Lus10033195 [exp]	0	1
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Lus10010636 [exp]	3.5	0.9269
AT5G54600			Translation protein SH3-like f...		Lus10038125 [exp]	8.7	0.9299
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10024852 [exp]	9.3	0.8821
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10026571 [exp]	13.7	0.9205
AT2G22870		EMB2001	embryo defective 2001, P-loop ...		Lus10039653 [exp]	13.9	0.8795
AT3G15190			chloroplast 30S ribosomal prot...		Lus10041925 [exp]	16.1	0.9117
AT3G12110		ACT11	actin-11 (.1)		Lus10001693 [exp]	19.0	0.9035
AT2G22360			DNAJ heat shock family protein...		Lus10035920 [exp]	19.1	0.8191
AT5G14910			Heavy metal transport/detoxifi...		Lus10032167 [exp]	21.3	0.9110
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Lus10005719 [exp]	21.4	0.9167

Compare expression of checked genes

Lus10033195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.