Gene [FLAX] | FIBexDB

Lus10033196 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10039500 [exp]	192 / 7e-57	AT1G08315	383 / 2e-129	ARM repeat superfamily protein (.1)
Lus10002100 [exp]	183 / 3e-56	ND	/
Lus10005728 [exp]	139 / 1e-38	AT2G01080	213 / 4e-67	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Lus10017746 [exp]	125 / 1e-35	ND	/
Lus10007166 [exp]	123 / 1e-34	ND	/
Lus10021579 [exp]	111 / 2e-30	ND	/
Lus10032972 [exp]	102 / 2e-26	ND	/
Lus10032702 [exp]	102 / 1e-25	AT5G56730	135 / 7e-36	Insulinase (Peptidase family M16) protein (.1)
Lus10023759 [exp]	99 / 1e-25	ND	/

Poplar homologues

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No hit found

PFAM info

Representative CDS sequence

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>Lus10033196 pacid=23178044 polypeptide=Lus10033196 locus=Lus10033196.g ID=Lus10033196.BGIv1.0 annot-version=v1.0

ATGGAGATTTGCACAGAGGCAAGCATCTGCTTCTTGGGGGAGCAGGTTTGGAATCCAGGCAAGGAAAGGTTTCAGAATTTCCAAGACGATCTTAGACCGT

TAGATTTTATTGCCAGCAGCAAGGGCAGATCTAAACCCCACGACATAACCCGACCAAGGTGCGACACCCCAGAGGCATCGACTAACTGTCGAGCCACAGG

GGAAGGCCACTGGAACCTCTCCAGCCTCAGAACCCTAGCCTTCGCAAGCCGGAGCCTAAACCGTGATGTCGGCCAACCCGTGCTTCCAGAGGCGGTGGGC

TACGTGACCGCCGAAACTAGGGATCACTGTAGGGATCCGAGGTCCACCAGGAGTTGGATCAGTAAGCAACCATTCCCAGCCAGTGTTGCTAGACTGGACC

CCTGCAGAACGCGCTCCTCTGCCACATTTAGGGCCCACAGTAGACGAGCCCTACGACCCACCAGACGATCCAGTACCCGCTCCAGATCTAGATGGAGCGG

CTATAGCTCTCCCTGTAGGTCTCTTCCGCGAGCGTGCACTATCCAGCAAGAAAGGGTGAAACTAGGCATCACAATCGTCATCCTCATCTCCGTCACCGTC

CGACGGGATCTGCTCATCGTCGCTGTCGGAATCATCTCGAATGGTATGATAGCCCAAATCCGGAGGCTAGCTAGCAAAAATCTCATCAATAGTCAGCTCT

CTCCCAGCAGAGTGCAGATCGGGGTCCATGTATATCGGTCCGGAAATCTGAAACTACGCACTAGACTGCCCATCATCACCTAG

AA sequence

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>Lus10033196 pacid=23178044 polypeptide=Lus10033196 locus=Lus10033196.g ID=Lus10033196.BGIv1.0 annot-version=v1.0

MEICTEASICFLGEQVWNPGKERFQNFQDDLRPLDFIASSKGRSKPHDITRPRCDTPEASTNCRATGEGHWNLSSLRTLAFASRSLNRDVGQPVLPEAVG

YVTAETRDHCRDPRSTRSWISKQPFPASVARLDPCRTRSSATFRAHSRRALRPTRRSSTRSRSRWSGYSSPCRSLPRACTIQQERVKLGITIVILISVTV

RRDLLIVAVGIISNGMIAQIRRLASKNLINSQLSPSRVQIGVHVYRSGNLKLRTRLPIIT

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033196 [exp]	0	1

Lus10033196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.