Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59580 615 / 0 ATMPK2 mitogen-activated protein kinase homolog 2 (.1.2) AT1G10210 604 / 0 ATMPK1 mitogen-activated protein kinase 1 (.1.2) AT2G18170 580 / 0 ATMPK7 MAP kinase 7 (.1) AT4G36450 561 / 0 ATMPK14 mitogen-activated protein kinase 14 (.1) AT1G07880 390 / 2e-135 ATMPK13 Protein kinase superfamily protein (.1.2) AT4G11330 390 / 5e-135 ATMPK5 MAP kinase 5 (.1) AT4G01370 388 / 3e-134 ATMPK4 MAP kinase 4 (.1) AT3G45640 386 / 2e-133 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT2G43790 378 / 4e-130 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT1G01560 367 / 9e-126 ATMPK11 MAP kinase 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010637 [exp] 704 / 0 AT1G59580 657 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Lus10025986 [exp] 535 / 0 AT2G18170 617 / 0.0 MAP kinase 7 (.1) Lus10014283 [exp] 535 / 0 AT2G18170 611 / 0.0 MAP kinase 7 (.1) Lus10018127 [exp] 393 / 6e-136 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10036136 [exp] 392 / 1e-135 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10007921 [exp] 391 / 3e-135 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 389 / 3e-134 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10024668 [exp] 387 / 1e-133 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 385 / 7e-133 AT4G01370 630 / 0.0 MAP kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G231100 [exp] 641 / 0 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.002G032100 [exp] 628 / 0 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.005G119500 [exp] 573 / 0 AT2G18170 662 / 0.0 MAP kinase 7 (.1) Potri.007G020100 [exp] 568 / 0 AT2G18170 654 / 0.0 MAP kinase 7 (.1) Potri.002G162500 [exp] 392 / 1e-135 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.009G066100 [exp] 390 / 5e-135 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.007G139800 [exp] 391 / 6e-135 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.003G131800 [exp] 389 / 3e-134 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 387 / 2e-133 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.017G010200 [exp] 385 / 1e-132 AT2G43790 677 / 0.0 MAP kinase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10033197 pacid=23178053 polypeptide=Lus10033197 locus=Lus10033197.g ID=Lus10033197.BGIv1.0 annot-version=v1.0 ATGGCAACTCCAGTTGAGCCACCAAATGGGGTTAGGATTCAAGGGAAGCACTATTATTCAATGTGGCAAACTTTGTTTGAGATCGATATAAAGTATGTCC CTATAAAGCCAATCGGCCGTGGTGCTTATGGTATAGTGTGTTCTTCAGTGAATAGGGAAACCAATGAGAAAGTTGCTATTAAGAAGATACACAATGTGTT CGAAAACCGTATTGATGCCCTCAGGACTCTGCGTGAACTCAAGCTCCTTCGCCATCTTCGCCACACCAATGTGATTGCTTTGAAAGATGTGATGATGCCA ATCCACAGGAGGAGCTTCAAGGATGTTTATTTCGTTTACGAATTAATGGATACCGATCTCCACCAGATTATTAAGTCCTCTCAGTCACTCTCCAATGATC ACTGCCAGTACTTCCTATTCCAGCTGCTTAGAGGTCTGAAGTATCTTCACTCAGCAAACATCCTACACCGTGATCTCAAACCTGGAAACCTCCTCATCAA CGCAAATTGCGACCTCAAAATCTGCGATTTCGGCCTAGCAAGAACCAGCACGGGAAAAGGCCAGTTCATGACCGAGTATGTAGTGACGCGCTGGTACCGT GCTCCGGAGCTCCTCCTTTGCTGCGACAACTATGGAACGTCGATCGATGTCTGGTCTGTGGGATGCATATTTGCTGAACTACTGGGAAGGAAGCCTCTCT TTCCCGGCACAGAATGTCTCAACCAACTGAAGCTCATAATCAACATTCTTGGTAGCCAGAGGGAAGAGGATCTCGAGTTCATCGACAACGCAAAAGCTAA AAAGTTTATAAAATCACTTCCTTATTCTCCAGGGACTGCATTCGCCCATCTTTACCCCAATGCGCATCCTTTGGCCATTGACCTATTGAGGAAGATGCTT ATCTTTGACCCTTCGAAGAGGATAACTGTGATCGAAGCATTACAGCATCCCTACCTGTCTCCACTTTATGATCCCAACTGTAATCCTCCTGCTCAGTTGC TAGTCGATGATCTTGAGATTGATGAGGAGTTGGGGGAAGAAATGATCCGTGAGACTATGTGGAAGGAGATGTTACATTACCATCCTGAGTTTGCAGCAGC AAGTGGTGGGGAGTTCTGCTACCAGTAG
AA sequence Show only first row Show all	>Lus10033197 pacid=23178053 polypeptide=Lus10033197 locus=Lus10033197.g ID=Lus10033197.BGIv1.0 annot-version=v1.0 MATPVEPPNGVRIQGKHYYSMWQTLFEIDIKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKKIHNVFENRIDALRTLRELKLLRHLRHTNVIALKDVMMP IHRRSFKDVYFVYELMDTDLHQIIKSSQSLSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTSTGKGQFMTEYVVTRWYR APELLLCCDNYGTSIDVWSVGCIFAELLGRKPLFPGTECLNQLKLIINILGSQREEDLEFIDNAKAKKFIKSLPYSPGTAFAHLYPNAHPLAIDLLRKML IFDPSKRITVIEALQHPYLSPLYDPNCNPPAQLLVDDLEIDEELGEEMIRETMWKEMLHYHPEFAAASGGEFCYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10210		ATMPK1	mitogen-activated protein kina...		Lus10033197 [exp]	0	1
AT1G59580		ATMPK2	mitogen-activated protein kina...		Lus10010637 [exp]	1.4	0.9163
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10014409 [exp]	3.3	0.8602
AT5G10290			leucine-rich repeat transmembr...		Lus10000629 [exp]	3.5	0.8745
AT3G17920			Outer arm dynein light chain 1...		Lus10041988 [exp]	3.9	0.8731
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036449 [exp]	10.1	0.8306
AT1G67900			Phototropic-responsive NPH3 fa...		Lus10000443 [exp]	10.5	0.8292
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10027949 [exp]	11.8	0.8799
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10026486 [exp]	13.1	0.8640
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	14.0	0.8571
AT4G01840		KCO5, ATTPK5, A...	Ca2+ activated outward rectify...		Lus10004525 [exp]	20.9	0.8424

Compare expression of checked genes

Lus10033197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.