Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27660 121 / 1e-30 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G20640 74 / 2e-14 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 72 / 4e-14 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G21340 69 / 5e-13 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G05170 64 / 2e-11 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29100 64 / 3e-11 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 64 / 3e-11 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G61660 64 / 5e-11 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G31050 63 / 1e-10 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31730 59 / 2e-10 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010638 [exp] 498 / 1e-176 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014279 [exp] 86 / 7e-18 AT5G44230 374 / 5e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038550 [exp] 85 / 1e-17 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 82 / 2e-17 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 81 / 6e-17 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 77 / 2e-15 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023669 [exp] 67 / 3e-12 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10025987 [exp] 67 / 3e-12 AT1G27660 119 / 6e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 60 / 6e-11 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G230800 [exp] 134 / 1e-35 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G032400 [exp] 124 / 6e-32 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G020200 [exp] 99 / 8e-23 AT1G27660 155 / 8e-43 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G119601 [exp] 90 / 9e-20 AT1G27660 145 / 2e-39 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 82 / 5e-17 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.001G185900 [exp] 79 / 3e-16 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G033000 [exp] 79 / 4e-16 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.001G410600 [exp] 77 / 2e-15 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 76 / 2e-15 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G129500 [exp] 76 / 6e-15 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033198 pacid=23178055 polypeptide=Lus10033198 locus=Lus10033198.g ID=Lus10033198.BGIv1.0 annot-version=v1.0 ATGCATATGATGATGATGGCATATGGTCCATTACATACTAACAGCTGCAACCCACTTAATAACCATTACCTTAGTGATGGAGGTTTGGTACACCCAGCAA GGAACCACCACCAAGATCAATTGAGCTTCCAATGGAACACCAACTCCAACCGCTTCACCACCGCCACATCAGCAGCTGTTAAGGACGAAGAAGGATCATC CCTCTCCTCCTCCACCACCACATCATCTGACCCTTTTCCTAGGTTCACCGACATGCTCATCACCAACGATGACTCCTCAGCCTCCTCATCCATCGTTGTT TCAGACAACTCATCGTCGCCGTCCTTTGGCTACCACCACTACTCCCACGGCCACTACCAGTTTCTGCCGTTTAATGCTAGTAGGAGTGGTAGCAGCAGCA GCAGCAGCCTGATATACCCTAGCATCAATGTCTCCAGCCTCAACCACACGGACGTCAACTTGCAAGCCTTGGATCAGAATCTACTATTTGCTGGCACTAG TCTCTTAAGAGATCATCAAAGCATTATTATTAATCCTTATCCTGCTGCTGATCACATGCCTCAATATTGTACCCCTACCACTAAGGTGTCGTCAACGTCA GAATTGAGGGAGAACTTGGAAAAGGTGGCGTCGACGGAGAGGGATCAGGTGAAGAGGTGCAACAGTGGGAGCATCGTCAAGGATCAGTCGTCAACGACGG TACAGCTGCCAGCAAGTACTACTGCAAATAAGAAGTCCAAAGTTGACCAGCCGCGTGCCTCCTGCCCTCCCTTTAAGGTTAGAAAAGAGAAACTTGGTGA CAGGATCACCGCCTTGCAGCAGTTGGTCGCCCCTTTTGGCAAGACTTTAAGCGTGCCTTATATGAAATCAACTCGCAACAAGCCACCTCAGTCCATGCAT TTTCAACAGGCAGAGGGTGGGACTGGAGAAGTATCAAGCAGAGATCTTAGAAGCCGAGGACTGTGTCTGGTCCCGCTGTCCTGCACGTCCTACATAACCA ACATCGACACCGGAGCCGCCGGTGGCTACTCCGGAGCTATGTGGCCACCTCCACCGCCCCATTTCGGTCAAGGAACATACAATTTGTAG
AA sequence Show only first row Show all	>Lus10033198 pacid=23178055 polypeptide=Lus10033198 locus=Lus10033198.g ID=Lus10033198.BGIv1.0 annot-version=v1.0 MHMMMMAYGPLHTNSCNPLNNHYLSDGGLVHPARNHHQDQLSFQWNTNSNRFTTATSAAVKDEEGSSLSSSTTTSSDPFPRFTDMLITNDDSSASSSIVV SDNSSSPSFGYHHYSHGHYQFLPFNASRSGSSSSSSLIYPSINVSSLNHTDVNLQALDQNLLFAGTSLLRDHQSIIINPYPAADHMPQYCTPTTKVSSTS ELRENLEKVASTERDQVKRCNSGSIVKDQSSTTVQLPASTTANKKSKVDQPRASCPPFKVRKEKLGDRITALQQLVAPFGKTLSVPYMKSTRNKPPQSMH FQQAEGGTGEVSSRDLRSRGLCLVPLSCTSYITNIDTGAAGGYSGAMWPPPPPHFGQGTYNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10033198 [exp]	0	1
AT3G01720			unknown protein		Lus10014878 [exp]	6.0	0.7493
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Lus10004690 [exp]	8.6	0.8012
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10008166 [exp]	12.6	0.7211
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10043195 [exp]	13.0	0.7469
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Lus10005683 [exp]	16.6	0.7108
AT1G67790			unknown protein		Lus10034566 [exp]	17.3	0.7813
AT1G20225			Thioredoxin superfamily protei...		Lus10021843 [exp]	18.0	0.6925
AT3G25290			Auxin-responsive family protei...		Lus10021553 [exp]	19.0	0.7792
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10010520 [exp]	20.3	0.7618
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10005956 [exp]	24.9	0.7693

Compare expression of checked genes

Lus10033198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.