Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75350 166 / 7e-54 EMB2184 embryo defective 2184, Ribosomal protein L31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010639 [exp] 260 / 3e-91 AT1G75350 169 / 5e-55 embryo defective 2184, Ribosomal protein L31 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G033300 [exp] 179 / 3e-59 AT1G75350 178 / 2e-58 embryo defective 2184, Ribosomal protein L31 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01197 [flax] [poplar] Ribosomal_L31 Ribosomal protein L31
Representative CDS sequence Show only first row Show all	>Lus10033200 pacid=23178072 polypeptide=Lus10033200 locus=Lus10033200.g ID=Lus10033200.BGIv1.0 annot-version=v1.0 ATGGCGCAAACTCTGACTAGCGCTTTCCTCCAATTCAAACCGCTCTCTACTCTGCCTCTCTCCGCCTCCAAGCCGATGGTTTGCGCCACAAGAACTAGGA AAGGAGGGTTTCAGGTGACGTGCAGGAAGAAGGACATACACCCGGAGTTCCACATGGATTCCAAGGTTTACTGCAACGGGGAGCTGGTGATGACCACCGG CGGCACTCAGAAGGAGTACAACATCGATGTTTGGTCCGGCAACCACCCTTTCTACTTGGGAAACCGCACCGGCGTGCTAGTGGCCGCCGACCAGGTCGAG AAGTTCCGTAAGAAGTACGGCGAGCTCACCGATTTCATGCAGATTCCTGTCCTCAAAGGCGAGATTGTATTGCCTTCCAGGAAGAAATCTGTCAAGAAGA AGAAGTAG
AA sequence Show only first row Show all	>Lus10033200 pacid=23178072 polypeptide=Lus10033200 locus=Lus10033200.g ID=Lus10033200.BGIv1.0 annot-version=v1.0 MAQTLTSAFLQFKPLSTLPLSASKPMVCATRTRKGGFQVTCRKKDIHPEFHMDSKVYCNGELVMTTGGTQKEYNIDVWSGNHPFYLGNRTGVLVAADQVE KFRKKYGELTDFMQIPVLKGEIVLPSRKKSVKKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10033200 [exp]	0	1
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10010639 [exp]	1.4	0.9886
AT5G65220			Ribosomal L29 family protein ...		Lus10019653 [exp]	1.7	0.9809
AT2G33450			Ribosomal L28 family (.1)		Lus10011792 [exp]	2.8	0.9750
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10025799 [exp]	3.2	0.9777
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10027058 [exp]	3.2	0.9832
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	3.5	0.9790
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10025642 [exp]	5.3	0.9762
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10037822 [exp]	5.5	0.9769
AT4G34620		SSR16	small subunit ribosomal protei...		Lus10025592 [exp]	6.3	0.9734
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10027894 [exp]	6.6	0.9729

Compare expression of checked genes

Lus10033200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.