Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75330 547 / 0 OTC ornithine carbamoyltransferase (.1) AT3G20330 100 / 2e-23 PYRB PYRIMIDINE B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010641 [exp] 707 / 0 AT1G75330 547 / 0.0 ornithine carbamoyltransferase (.1) Lus10013346 [exp] 99 / 9e-23 AT3G20330 547 / 0.0 PYRIMIDINE B (.1) Lus10000002 [exp] 88 / 1e-21 AT1G75330 85 / 2e-21 ornithine carbamoyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229400 [exp] 614 / 0 AT1G75330 561 / 0.0 ornithine carbamoyltransferase (.1) Potri.001G357200 [exp] 95 / 1e-21 AT3G20330 550 / 0.0 PYRIMIDINE B (.1) Potri.002G033701 [exp] 77 / 6e-18 AT1G75330 74 / 3e-17 ornithine carbamoyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0399 [flax] [poplar] Asp-glut_race PF00185 [flax] [poplar] OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CL0399 [flax] [poplar] PF02729 [flax] [poplar] OTCace_N Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
Representative CDS sequence Show only first row Show all	>Lus10033203 pacid=23178098 polypeptide=Lus10033203 locus=Lus10033203.g ID=Lus10033203.BGIv1.0 annot-version=v1.0 ATGGCAGCGGTCCCTTGCCACTGTGCTCCTCCAACCAACAGGCTCTCTCTCCCATCGCCATCTTCTTCATTTTCCGGAAATCTTCTCTTCCGATCTCCCC GACTGTCCTGCGTATCTGCTCGTTCTAGAGCCATTCGAGGAAGAATATACTGCCAGAGCTCCGCCGTCGTTGGGAAAGATAAAGGACACCTGAAGGATTT TATTCACATTGATGATTTCGACAAAGAAACAATCATGAAGATGCTAAAGCGGGCAGCTGAAGTGAAGGCATTATTGAAATCTGGAGAAAGGACGTATCTT CCCTTTAAGGGGAAGACGATGGCTATGATCTTTGCTAAGCCATCAATGAGAACAAGGGTTTCATTTGAGACTGGCTTTTTCTTACTTGGAGGGCATGCCG TCTACTTGGGTCCTGATGACATCCAGATGGGTAAAAGGGAGGAAACCCGCGATGTTGCTCGTGTCTTGTCTCGTTATAATGATATACTCATGGCTCGCGT CTTTGCTCATCAGGACATAATGGATCTAGCAAAATATGCAGCTGTACCTGTTATCAATGGCCTAACTGATTACAATCATCCTTGCCAAATAATGGCTGAC GCCCTGACTGTGATTGAACGCGTTGGTCAATTGGAAGGAACTAAGGTCGTATATGTTGGGGACGGCAATAACATTGTGCACTCATGGTTATTGCTAGCAG CTGTAGTTCCATTCCATTTTGTTTGTGCTTGCCCCAAAGGTTTCGAACCAAACCACCAAACAGTTGAGAAAGCACAAGAGGCAAGTATCAACAAGATTGA GATAACAAATGACCCAAAAGAAGCTGTTCGAGGAGCTGACGTTGTTTACTCAGATGTCTGGGCCAGCATGGGTCAAAAGGAAGAGGCTGCACATCGCCGT CAAGTGTTTCAAGGATTCCAGGTGGATGAAGAGCTGATGAAGTTGGCTGGCCCGCAAGCATATTTCATGCATTGTCTACCTGCAGAAAGGGGAGTTGAGG TTACTGATGCTGTTATCGAAGCTCCAAACTCGATAGTCTTTCCTCAAGCCGAGAATCGGATGCATGCCCAGAATGCCATAATGCTTCATGCGCTTGGATT GTGA
AA sequence Show only first row Show all	>Lus10033203 pacid=23178098 polypeptide=Lus10033203 locus=Lus10033203.g ID=Lus10033203.BGIv1.0 annot-version=v1.0 MAAVPCHCAPPTNRLSLPSPSSSFSGNLLFRSPRLSCVSARSRAIRGRIYCQSSAVVGKDKGHLKDFIHIDDFDKETIMKMLKRAAEVKALLKSGERTYL PFKGKTMAMIFAKPSMRTRVSFETGFFLLGGHAVYLGPDDIQMGKREETRDVARVLSRYNDILMARVFAHQDIMDLAKYAAVPVINGLTDYNHPCQIMAD ALTVIERVGQLEGTKVVYVGDGNNIVHSWLLLAAVVPFHFVCACPKGFEPNHQTVEKAQEASINKIEITNDPKEAVRGADVVYSDVWASMGQKEEAAHRR QVFQGFQVDEELMKLAGPQAYFMHCLPAERGVEVTDAVIEAPNSIVFPQAENRMHAQNAIMLHALGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	0	1
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10042588 [exp]	1.7	0.9347
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10022043 [exp]	2.2	0.9332
AT5G09995			unknown protein		Lus10016816 [exp]	2.4	0.9330
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043478 [exp]	2.8	0.9340
AT5G05520			Outer membrane OMP85 family pr...		Lus10017441 [exp]	3.3	0.9397
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10040433 [exp]	4.7	0.9359
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Lus10020020 [exp]	6.6	0.9043
AT5G16620		PDE120, TIC40, ...	pigment defective embryo 120, ...		Lus10004053 [exp]	8.4	0.8938
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10023548 [exp]	10.0	0.9021
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10034378 [exp]	10.5	0.9192

Compare expression of checked genes

Lus10033203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.