Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75310 188 / 7e-48 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT4G36520 183 / 2e-46 Chaperone DnaJ-domain superfamily protein (.1) AT4G12780 161 / 4e-40 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12770 160 / 1e-39 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G21660 143 / 2e-35 Chaperone DnaJ-domain superfamily protein (.1) AT1G75100 114 / 1e-25 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G30280 87 / 2e-17 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010642 [exp] 1583 / 0 AT1G75310 261 / 8e-71 auxilin-like 1, auxin-like 1 protein (.1) Lus10024270 [exp] 650 / 0 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1) Lus10007394 [exp] 635 / 0 AT4G36520 284 / 2e-78 Chaperone DnaJ-domain superfamily protein (.1) Lus10041769 [exp] 186 / 5e-47 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10016078 [exp] 165 / 1e-40 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10012303 [exp] 163 / 1e-40 AT4G12770 618 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10012302 [exp] 164 / 2e-40 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016079 [exp] 162 / 2e-40 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10018854 [exp] 138 / 2e-33 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229300 [exp] 233 / 8e-62 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G033800 [exp] 203 / 2e-52 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G120700 [exp] 193 / 2e-49 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 191 / 9e-49 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G217200 [exp] 168 / 4e-42 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.014G197600 [exp] 166 / 2e-41 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.005G181700 [exp] 134 / 3e-32 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G079200 [exp] 130 / 2e-31 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G081500 [exp] 115 / 1e-26 AT1G30280 228 / 2e-69 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 105 / 1e-22 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033205 pacid=23178097 polypeptide=Lus10033205 locus=Lus10033205.g ID=Lus10033205.BGIv1.0 annot-version=v1.0 ATGGAGTCTCAGCCGGCTTCTGCTGCTGCTGCCCATGCCAACGGCCGGAAGCACGAGTACGGCATGTTTAGCGGTCCAATGAAGCTCGGGTATAGAGTGG AGGATTACAGGGAGATATTTGAATGCTCGGGAACGTCGTCCATTCCGGTGCTTGATGTTCCCGAGCAGAATGAGAGGAAGGCTTCCGTCGAGCCTCGGAG CTCTCGGCTGGATTACTCCAAGATTTTCGGGGGACTCGGAGAAGCGGACATTGCTATGCCTTACGACAACTTGAAATCGAGAGCGGAGAAGGATATTTGG GTTCCAGCTGAATCAAGATCACAGTTTTCAGGGAATGAGCAATCTACTTTTGCTGAAAGGAAGCGAATGTCAGCAGCGGAAGCATCTCTTCAGTCATTGG ATGGTGGGACAAATGTCAACGTGTTGTATCATAAGACAAACTCGGGAGGCAGAATGGGGAGAAGTGGCATGACCCACGTTGCTCAGTTCCATGCTGTTCC ACGCTTCACTCATCTAGTTGACGAAAATGTGCCCTCGGAATCTACTGGAGGGGCCAAGTCTGGCCGCTATGTGCTTACCAATGTTCATCTTAATCTCAGT GAGGAGATGAAGGAAACCAGGTCCAAGAGGAGAGGTTACTCCGGACCACTTCTCTTCAGCAATGATTCGGGACAGCACACAGATCATCACAGGACGTCTA GTTCCGTATTTAATGATGTATCGTCTGACCTTCACAGAGGCTCACATCCATCTGCAGTTTCTTCATCGTCTCCAAGCTCACCACTTAGCTTTGGTAATGA GAAGGCTGCTTCCATCAGATCGCTGAACTCCAAACTTGGGTTTTCTAAAAGTGCCGCTGGCTATTATTCACCACCATTCTTGGATGATGAAATAGATGCA AATTCAACTGCTGTTGCTTCTGCAGCTGCGGTGCGAAAGGCAATAGATGATGCTGAAGCAAAAATTAAATTTGCAAAAGAACTCATGGAAAGGAGAAAAG ATGGTCGTCATAATCGTTCGAAACCAAAGGTTAATCATGGCTTGAAGGCTGAGACGAAACTGGAAGCTGTATGGGCTGAAATGTACAGGAGAGATGATGC TCCAAAACGGCAAGTCGTTAACTGCTCACCAGCTCAAAGTTCAGGAGAAGTACGCCAAATGAATTTGGATTCCAGGGACCAGAAGAAAGATTCTATTTCT AGACCCTCTCATACAGTAAACTACCAGGAAGAAAACACGTTTACTAAAGTTGATTCCAGACTGGAAGAAATAGAGATCCGCAAAACTCCGCGAGAGTTTT CTGAAGCTGCTATTAGCAAAGGGCTCAGGTCATCAATATCAGAGTTACTCGAAGAAGACCTGGGGCAAAAAGTAATGCCAAGTAGTTATGAGAACAAATG GAAGGAGAAGATGAAAGCATCATTTCTACAGGACAAATTTGAAAACATAATGAAAATGCTGCGAGCACCAGAAGATGTTCCAGATGTTGAAGACCAACTG ATGGCGGAAAGAAAATCAGCTGGGCTAAAAGGACCTGTAGGTCATGTGAGAAGTGAAGAGAAACAAGAGGCTACATGCACCAAAGAGAAAATAAAAGGTA GGTCAAACGAAGGCACCACAACGAAGGAGGATGAGAGCACAGTTAAAGTTAATTCCTGGCTGAATAATATTGCTAAGAGGCATAAGGAACAAAAAGATTA TCAGAATGGCGACGAAATGGAGAAGAAACAAAGTTTTGATAGGAGGGAAGATGACCCAGAGAACAATTCTTATGAAATTGATGGAGGGGAACCATCAAAA GTAAGGTTTGACCGTTTTGGGATAGAGAAGGAAGGCCGAGACAAGTCTACAGCAAGGGAGGAGGAAGTAGTGATAGACAAGGTTGAAGAAACTGAGAAAG AAAGTGGGATTGATGATGATGATCCTATTAATCCTACTAGCAGCAGGCGAGAAAGCTTTTCCGATTCTATGGGTACTAAGAGGTTAGACTCGGTGGTTCA TCAGAGGTTGGAAGGTGATGCAAAGGCTAAGGTTGCTCAAGAGCCTCTTGGATTGCTGAATGACAACGTTGAAGTGCTTCATGCACTGCACAACCGAGAG GAAAGTGAGAATGCCGAGCAGATCAATGAATCCCATAGATACAGAGAGCTTGTGGTTACAGCGAATGACAGGGCCACCAACCCTTTCTCTGGGTCCGGAG ACATTGAAAAACAATCAAATGTTTTTGAAGAGACATATAACTTTGAGGAAGGGTCGGATTGTACAAGGGTTGACCCTTTTAATTCTACTGCATTCGTTGG GATCGGAAAACAAAGAGATGAGCCCCTTATTGTTGATGAAAATGGGGTCTGTTCAAGTGGACTTGCTTTCAACTTCAAGTACCAGCATACTGAAGACAGT GCGGCAAACAGTGAAGGAACCTATTGTCCTGAAAATCACGTTGAAGAAGCGACTAGACTGTCAGGAGAAAGCAAAGATAACACTAAGGATGCTGAAGTTG GCAGAACAGATGAAGATACTGCTAGTGACCTTGCATCTCTTAATGAGGTAAAGGTGTTACCAAATGGGGAAGAATCCAGGCCGCTCGCAGAACTGGAAAA GCCTGTAGAAGAAGCCACTGTTGAATTGGAAGACCATGATAAGGATAACGTTAACAATGATAAATTGGTTGGTGAAAGGAAATTATCGGATGATGGAATA AGTAAAAGAACAAGTCAGGAATTTTGGGAGTCTGAGAAGGAAGAACCTGTCGAGGCAGCAGTATCGTCACGTGAGAAAACAACTAAAAGTATCATTGACG ACTCTGAGGATGCTTATTATGAGGCGCTCCAAATGCAAGAGACAGAAGAAAAACAAAGCTCACAAATGGATGTGGAGGTGGAAAGGCAGCAACCAAGGGA AAAGGAAGTTGCAAAAGAGAGAGACTTGGAAAAAGAGAAAGAGCGAAGAGTTGTGGAAAGGGCAATAAGGGAAGCACGTGAAAGGGCATTTACTGAAGCT CGAGAGAAGGCAGAAAAGTCAGCTGCAGCAGAAGCTCAGCGAAGAGCAAAGGCTGTGGCTGCTGCTCGAGAGAGGTCTGAGAGGGCTACCGCATCTGAGA AAGCTTCCACAGAAGCCAAACTGAAAGCTGAGCGTGCGGCAGTTGAAAGAGCAACTGCAGAAGCTAGAGAGCGGGCTCTGGAGAAAGCATTATTTGAGAA GGCTTCCCTCAAAGGGAAAAATTGTGCAGAGAAGTCTCCTGCCGTTTCAACTGATGATGGAAGACCCATTTATCAGCGACACAAAAGCTCAGGTTATGAT ACCAGCTCAAGACATCCAAGTTGCGCAAGTAGTAGTGTTCCAAACCCAGTTGAAATCTCTGGTAATGGAGCAAAAGGTGAATCATCTCTGAAATCTAAAG CCTCCTTGGAGAAGCAGCAGCAAATGGCTGAGCGCGCGGCGAAAGCTCTGGCAGAGAAGAATATGCGCGATCTTCTTGTTCAGAAGGAGCAAGCTGAAAA AAATAGACTAGCAGAAGTTGTGGATGCGGAGATAAAAAGGTGGTCCAGCGGGAAGGAGCGGAACTTACGAGTTCTGCTTTCTACACTTCACTACATCCTT GGACCTGAGAGTGGTTGGCAAGCGATTCCTAGGACGGATCTTAACTCAGCTACTGCTGTTAGGAAAGCTTACAAGAAGGCAACTCTTTTTGTCCATCCTG ATAAATTGCAGCAGCGCGGTGCCAGCATTCGCCACAAGTACGTTTGCGAGAAGGTCTTCGAACTCCTCAAGTGCAAGCTAGCGGAAGAGAGCACCAGGGA GAGTGTAGCCGCTCTATCTAGCTCTGGAGCGGGTACTAGATCCTCTCGTGGGTCACAGGACTCGTCTAATGTGGGCCCTAGGCGGGGCAGAGGAGCGCGT TCTACAGGGGTCCACTCTAGCAGCATCAGCGGGGAGTGGTTGCTTACCGGTCCAGCTCCCGGAGGACCCCGGATCCCTACTGTGATCCCAAGTTTCGGCG GTCACATAGCCCACCGCCTCTGGACATAG
AA sequence Show only first row Show all	>Lus10033205 pacid=23178097 polypeptide=Lus10033205 locus=Lus10033205.g ID=Lus10033205.BGIv1.0 annot-version=v1.0 MESQPASAAAAHANGRKHEYGMFSGPMKLGYRVEDYREIFECSGTSSIPVLDVPEQNERKASVEPRSSRLDYSKIFGGLGEADIAMPYDNLKSRAEKDIW VPAESRSQFSGNEQSTFAERKRMSAAEASLQSLDGGTNVNVLYHKTNSGGRMGRSGMTHVAQFHAVPRFTHLVDENVPSESTGGAKSGRYVLTNVHLNLS EEMKETRSKRRGYSGPLLFSNDSGQHTDHHRTSSSVFNDVSSDLHRGSHPSAVSSSSPSSPLSFGNEKAASIRSLNSKLGFSKSAAGYYSPPFLDDEIDA NSTAVASAAAVRKAIDDAEAKIKFAKELMERRKDGRHNRSKPKVNHGLKAETKLEAVWAEMYRRDDAPKRQVVNCSPAQSSGEVRQMNLDSRDQKKDSIS RPSHTVNYQEENTFTKVDSRLEEIEIRKTPREFSEAAISKGLRSSISELLEEDLGQKVMPSSYENKWKEKMKASFLQDKFENIMKMLRAPEDVPDVEDQL MAERKSAGLKGPVGHVRSEEKQEATCTKEKIKGRSNEGTTTKEDESTVKVNSWLNNIAKRHKEQKDYQNGDEMEKKQSFDRREDDPENNSYEIDGGEPSK VRFDRFGIEKEGRDKSTAREEEVVIDKVEETEKESGIDDDDPINPTSSRRESFSDSMGTKRLDSVVHQRLEGDAKAKVAQEPLGLLNDNVEVLHALHNRE ESENAEQINESHRYRELVVTANDRATNPFSGSGDIEKQSNVFEETYNFEEGSDCTRVDPFNSTAFVGIGKQRDEPLIVDENGVCSSGLAFNFKYQHTEDS AANSEGTYCPENHVEEATRLSGESKDNTKDAEVGRTDEDTASDLASLNEVKVLPNGEESRPLAELEKPVEEATVELEDHDKDNVNNDKLVGERKLSDDGI SKRTSQEFWESEKEEPVEAAVSSREKTTKSIIDDSEDAYYEALQMQETEEKQSSQMDVEVERQQPREKEVAKERDLEKEKERRVVERAIREARERAFTEA REKAEKSAAAEAQRRAKAVAAARERSERATASEKASTEAKLKAERAAVERATAEARERALEKALFEKASLKGKNCAEKSPAVSTDDGRPIYQRHKSSGYD TSSRHPSCASSSVPNPVEISGNGAKGESSLKSKASLEKQQQMAERAAKALAEKNMRDLLVQKEQAEKNRLAEVVDAEIKRWSSGKERNLRVLLSTLHYIL GPESGWQAIPRTDLNSATAVRKAYKKATLFVHPDKLQQRGASIRHKYVCEKVFELLKCKLAEESTRESVAALSSSGAGTRSSRGSQDSSNVGPRRGRGAR STGVHSSSISGEWLLTGPAPGGPRIPTVIPSFGGHIAHRLWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10033205 [exp]	0	1
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	3.0	0.9391
AT3G53540			unknown protein		Lus10025296 [exp]	4.6	0.8980
AT4G39790			Protein of unknown function (D...		Lus10024039 [exp]	5.3	0.9115
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	5.3	0.9318
AT5G58230		MSI1, MEE70, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033459 [exp]	6.2	0.9056
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10022338 [exp]	6.6	0.9071
AT2G05760			Xanthine/uracil permease famil...		Lus10030014 [exp]	7.3	0.9212
AT1G77270			unknown protein		Lus10029729 [exp]	7.7	0.9146
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	8.7	0.9211
AT5G46920			Intron maturase, type II famil...		Lus10011050 [exp]	11.5	0.8994

Compare expression of checked genes

Lus10033205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.