Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47270 426 / 6e-148 TUB AtTLP6 tubby like protein 6 (.1.2) AT2G18280 398 / 3e-137 TUB AtTLP2 tubby like protein 2 (.1.2) AT2G47900 371 / 2e-126 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT1G25280 358 / 4e-121 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G76900 349 / 2e-117 TUB AtTLP1 tubby like protein 1 (.1.2) AT3G06380 341 / 3e-115 TUB ATTLP9 tubby-like protein 9 (.1) AT1G43640 338 / 3e-113 TUB AtTLP5 tubby like protein 5 (.1) AT5G18680 331 / 4e-111 TUB AtTLP11 tubby like protein 11 (.1) AT1G53320 293 / 2e-96 TUB AtTLP7 tubby like protein 7 (.1) AT1G16070 62 / 3e-10 TUB AtTLP8 tubby like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010645 [exp] 705 / 0 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10033209 [exp] 692 / 0 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2) Lus10010833 [exp] 676 / 0 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2) Lus10014299 [exp] 428 / 1e-148 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10026007 [exp] 417 / 3e-144 AT2G18280 471 / 6e-166 tubby like protein 2 (.1.2) Lus10028309 [exp] 413 / 5e-143 AT2G18280 481 / 1e-169 tubby like protein 2 (.1.2) Lus10041757 [exp] 412 / 1e-142 AT2G18280 478 / 9e-169 tubby like protein 2 (.1.2) Lus10033977 [exp] 366 / 1e-124 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10012803 [exp] 359 / 1e-122 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G228500 [exp] 497 / 4e-176 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.002G034600 [exp] 490 / 3e-173 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.007G023400 [exp] 433 / 7e-151 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.005G121600 [exp] 431 / 7e-150 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.008G195200 [exp] 369 / 6e-126 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.005G192400 [exp] 369 / 2e-125 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.005G192300 [exp] 360 / 7e-122 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.010G031000 [exp] 356 / 7e-121 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.002G068200 [exp] 357 / 8e-121 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.001G390200 [exp] 295 / 5e-97 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10033208 pacid=23178088 polypeptide=Lus10033208 locus=Lus10033208.g ID=Lus10033208.BGIv1.0 annot-version=v1.0 ATGTCGTTCAAGCGCGTTGTTAGGGAGATGAGGGACAGCATGGGGAGCAAATCGAGGGGCAGATCCAGCCGCCGTGGAAAAGCCCACATCGCGCCGGAAT GTGGGTTGGAGGTGCCCAGCCAATGGGATAACGGTAGCGATGATCAGGGTCCGTGGGCTAATTTTCCGGCGGAGCTTCTAAGGGATATAATTCAGCGGAT TGAATCGCGAGAGACCTCGTGGCCATCTAGGCGTGATGTGGTGGTTTGCGCCGCCGTGTGCCGTTCGTGGCGGGGGATTACGAAAGAGATCGTGAAAACC CCAGAGCAATGCAGCTGCCTCACTTTTCCCATCTCCCTAAAGCAGCCTGGGCCGAGAGATGCTCCAATTCAGTGCTTTATCAAGAGAGAAAGGGCAACCT CAACGTTTCAGTTGTACCTTGGTCTCAGCCCTGCTCTGTCTGGTTGTACGAGCAAGTTGTTGTTGGCTGCTAAGAAGGTTAGAAAGGCAACAAGTACTGA GTTTAGGATATCCTTTGTTGGAACTGATTTTTCTCAAGCCAGTAACACTTTTGTTGGAAAAATGAGGTCTAATTTCCTGGGTACCAAATTCACAATTCTT GAGAGTCAACCCTCCAATCCTGCTGACATGCAGTCTGGTCGAAAAGTTAATTCAGTTGAGGTATCATCATACCCTCCTGCTAGAGGGTTCAGCATCGCCA ACGTAGTTTACGAGCTCAATATCTTGCGTACGAGAGGTCCAAGAAGGATGCGATGCACAATGCAGTCAATTCCGATTTCATCAGTCCAGGAAGGAGGCAC TGCTCCTACTCCTACGGAATTGATGAATTGCTGCAATGAAAAACTGCCTTCATCTCCCAGTTCAAAAGGAAACAAGTCTGTCAATGACTTGTGCCAGCTA ACGAGTGAGGAGGCACTGTGCAAGGATCCTCTGGTTTTGAAAAACAAAGCTCCTAGATGGCATGAGCAGCTGCAATGTTGGTGCCTAAACTTCAAGGGGC GTGTGACTGTGGCTTCAGTGAAGAACTTCCAGCTAGTTGCAGCTGCAGAACCTTCACACAATGTTTCGCCCGAGGAGCAGGAGAAAGTGATTCTGCAATT TGGAAAGATTGGTAAAGACATCTTCACCATGGACTATCGCTATCCGATTTCTGCCTTCCAAGCTTTTGCAATCTGCCTTAGTAGCTTTGACACAAAGCCA GCTTGTGAGTAA
AA sequence Show only first row Show all	>Lus10033208 pacid=23178088 polypeptide=Lus10033208 locus=Lus10033208.g ID=Lus10033208.BGIv1.0 annot-version=v1.0 MSFKRVVREMRDSMGSKSRGRSSRRGKAHIAPECGLEVPSQWDNGSDDQGPWANFPAELLRDIIQRIESRETSWPSRRDVVVCAAVCRSWRGITKEIVKT PEQCSCLTFPISLKQPGPRDAPIQCFIKRERATSTFQLYLGLSPALSGCTSKLLLAAKKVRKATSTEFRISFVGTDFSQASNTFVGKMRSNFLGTKFTIL ESQPSNPADMQSGRKVNSVEVSSYPPARGFSIANVVYELNILRTRGPRRMRCTMQSIPISSVQEGGTAPTPTELMNCCNEKLPSSPSSKGNKSVNDLCQL TSEEALCKDPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPSHNVSPEEQEKVILQFGKIGKDIFTMDYRYPISAFQAFAICLSSFDTKP ACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033208 [exp]	0	1
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	1.4	0.8765
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	5.5	0.8159
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10040656 [exp]	6.7	0.8023
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	6.8	0.8518
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10039883 [exp]	9.5	0.8329
AT2G29970			Double Clp-N motif-containing ...		Lus10038320 [exp]	9.6	0.8423
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	9.9	0.8180
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	12.0	0.8121
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	16.1	0.8385
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	17.3	0.8347

Compare expression of checked genes

Lus10033208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.