Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47270 422 / 9e-147 TUB AtTLP6 tubby like protein 6 (.1.2) AT2G18280 394 / 1e-135 TUB AtTLP2 tubby like protein 2 (.1.2) AT2G47900 363 / 2e-123 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT1G25280 351 / 3e-118 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT1G76900 348 / 8e-117 TUB AtTLP1 tubby like protein 1 (.1.2) AT3G06380 337 / 2e-113 TUB ATTLP9 tubby-like protein 9 (.1) AT1G43640 335 / 6e-112 TUB AtTLP5 tubby like protein 5 (.1) AT5G18680 327 / 1e-109 TUB AtTLP11 tubby like protein 11 (.1) AT1G53320 286 / 8e-94 TUB AtTLP7 tubby like protein 7 (.1) AT1G16070 60 / 1e-09 TUB AtTLP8 tubby like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033208 [exp] 701 / 0 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10010833 [exp] 687 / 0 AT1G47270 469 / 3e-165 tubby like protein 6 (.1.2) Lus10010645 [exp] 673 / 0 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10014299 [exp] 428 / 1e-148 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10026007 [exp] 417 / 1e-144 AT2G18280 471 / 6e-166 tubby like protein 2 (.1.2) Lus10041757 [exp] 410 / 1e-141 AT2G18280 478 / 9e-169 tubby like protein 2 (.1.2) Lus10028309 [exp] 410 / 2e-141 AT2G18280 481 / 1e-169 tubby like protein 2 (.1.2) Lus10033977 [exp] 365 / 4e-124 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10012803 [exp] 358 / 3e-122 AT2G47900 523 / 0.0 tubby like protein 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G228500 [exp] 496 / 1e-175 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.002G034600 [exp] 484 / 4e-171 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.005G121600 [exp] 424 / 2e-147 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.007G023400 [exp] 417 / 2e-144 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.005G192400 [exp] 366 / 2e-124 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.008G195200 [exp] 359 / 4e-122 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.005G192300 [exp] 358 / 2e-121 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 354 / 1e-119 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.010G031000 [exp] 348 / 1e-117 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.001G390200 [exp] 290 / 3e-95 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10033209 pacid=23178050 polypeptide=Lus10033209 locus=Lus10033209.g ID=Lus10033209.BGIv1.0 annot-version=v1.0 ATGGGGCTTTCATTCAAGAGCTTTGTGAGGGAGATGAGGGACAGCGTGGGGAGTAAATCTAGGGGGAGAGTCAAGGGCCGGGGAAGAGCCCACATCGCAC CCGAAGGTGGGTCGGATGTACCCAACCAATGGGGTAACGGCGGCGATCAGGGTCCGTGGGCTAATTTGCCGGCAGAGCTTTTGAGGGATATTATTCAGCG GATTGAATCGCGGGAGACCTCGTGGCCATCTAGGCGTGACGTAGTGGTTTGTGCTGCCGTCTGCCGATCGTGGCGGGGTATCACAAAGGAGATCGTCAAG ACCCCAGAGCAATGCAGCTGCTTCACTTTCCCTATCTCGCTAAAGCAGCCTGGGCCGAGAGATGCTCCAATTCAGTGCTTTATCAAGAGAGAAAGGGCAA CCTCAACGTTTCAGTTGTACCTTGGTCTCAGCCCTGCTCTGTCTGGTTGTACGAGCAAGTTGTTGTTGGCTGCTAAGAAGGTTAGAAAGGCAACAAGTAC TGAGTTTAGGATATCCTTTGTTGGAACTGATTTTTCTCAAGCCAGTAACACTTTTGTTGGAAAAATGAGGTCTAATTTCCTGGGTACCAAATTCACAATT CTTGAGAGTCAACCCTCCAATCCTGCTGACATGCAGTCTGGTCAAAAAGTTAATTCAGTTGAGGTATCATCATTCCCTCCTGCTAGAGGGTTCAGCATCG CCAACGTAGTTTACGAGCTCAATATCTTGCGTACGAGAGGTCCAAGAAGGATGCGATGCACAATGCAGTCAATTCCGATTTCATCAGTCCAGGAAGGAGG CACTGCTCCTACTCCTACGGAATTGATGAATTGCGGCAACAAAAAACTGACTTCATCTCCCAGTTCAAAAGGAAACAATTCTGTCAATGACTTGTGCCAG CTAACGAGTGAGGAGGCACTGTGCAGGGATCCTCTGGTTTTGAAAAACAAAGCTCCTAGATGGCATGAGCAGCTGCAATGTTGGTGCCTAAACTTCAAGG GGCGTGTGACTGTGGCTTCAGTGAAGAACTTCCAGCTAGTTGCAGCTGCAGAACCTTCACACAATGTTTCGCCCGAGGAGCATGAGAAAGTGATTCTGCA ATTTGGAAAGATTGGTAAAGACATCTTCACCATAGACTATTGCTATCCGATTTCTGCCTTCCAAGCTTTTGCAATCTGCCTTAGTAGCTTTGACACAAAG CCAGCCTGTGAGTAA
AA sequence Show only first row Show all	>Lus10033209 pacid=23178050 polypeptide=Lus10033209 locus=Lus10033209.g ID=Lus10033209.BGIv1.0 annot-version=v1.0 MGLSFKSFVREMRDSVGSKSRGRVKGRGRAHIAPEGGSDVPNQWGNGGDQGPWANLPAELLRDIIQRIESRETSWPSRRDVVVCAAVCRSWRGITKEIVK TPEQCSCFTFPISLKQPGPRDAPIQCFIKRERATSTFQLYLGLSPALSGCTSKLLLAAKKVRKATSTEFRISFVGTDFSQASNTFVGKMRSNFLGTKFTI LESQPSNPADMQSGQKVNSVEVSSFPPARGFSIANVVYELNILRTRGPRRMRCTMQSIPISSVQEGGTAPTPTELMNCGNKKLTSSPSSKGNNSVNDLCQ LTSEEALCRDPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPSHNVSPEEHEKVILQFGKIGKDIFTIDYCYPISAFQAFAICLSSFDTK PACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10033209 [exp]	0	1
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10001081 [exp]	5.6	0.8153
AT5G09680		RLF	reduced lateral root formation...		Lus10019013 [exp]	7.7	0.7729
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10027807 [exp]	9.8	0.7274
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10031003 [exp]	10.6	0.7128
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10037083 [exp]	23.7	0.7359
AT1G01770			unknown protein		Lus10036349 [exp]	25.8	0.7435
AT3G56460			GroES-like zinc-binding alcoho...		Lus10003691 [exp]	27.0	0.7715
AT5G07470		PMSR3, ATMSRA3	ARABIDOPSIS THALIANA METHIONIN...		Lus10013673 [exp]	27.7	0.7419
AT2G31800			Integrin-linked protein kinase...		Lus10008350 [exp]	40.0	0.6809
AT5G01720			RNI-like superfamily protein (...		Lus10012214 [exp]	41.3	0.6859

Compare expression of checked genes

Lus10033209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.