Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75260 113 / 5e-27 oxidoreductases, acting on NADH or NADPH (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010832 [exp] 635 / 0 AT1G75260 164 / 6e-45 oxidoreductases, acting on NADH or NADPH (.1) Lus10001963 [exp] 180 / 1e-50 AT1G75260 115 / 2e-27 oxidoreductases, acting on NADH or NADPH (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G034700 [exp] 209 / 2e-61 AT1G75260 183 / 4e-51 oxidoreductases, acting on NADH or NADPH (.1) Potri.005G228400 [exp] 163 / 2e-44 AT1G75260 103 / 2e-23 oxidoreductases, acting on NADH or NADPH (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033210 pacid=23178069 polypeptide=Lus10033210 locus=Lus10033210.g ID=Lus10033210.BGIv1.0 annot-version=v1.0 ATGGCAGAGCAGAGGCAATTCCGATTCCGCCTTCCTTGGCTATCCTCCGTGACAGCTCCTCCCCGTCCAACACCTGAAACCGAACCTACCCGTCCTCCAC CTACCGAAATTCGAGCCCCTCCCCAACCCACCTCCACCATTTCCTCCCAACGTCCACCCTTCAGGCCTGCCGGAATAGCTCCTCCTCCTCCTCCTCCTCC TCCACCACCACAAGCTCCTGCTTCTCCCGTCAGGACAAGACGAACTACCTCGGTCCCACCATCTCCTACCCGGACCATGTCTCGCTCTCTGCTGTCAGAA GGAGCTCCAATAGCCCAATCAGCATCTCCGACACTGCCTTCTCCTGAACTAAAGCTTACGGAGGACATTCCTACCTCAAAAGCAGAGCATCAACGTTTAG GAAGCGGAGAGTCCGATCCCAAAATTTCAAAAGCAGCCACCACTGAAGAAATGAATGAACCGGAAGCAGAAACTAAACGAGATGAAAACACAAAAAGGGA AGGAAATACGAACCTCTCTAGTTCTGAAGGTACCCTGAGAAAAAGAGTCGCTGAACTTCTTTCATCTGCAACTCAAACCAGAGAGTCTGTGAGCATGGCC TCTCTATTCGGCGCTGACAGGAAGAAGTCTATGACGAGCACTGGATCAGTTGATGCGAAGATCAAAGGAGTTAGTTCTACTAGCCATACAAGGACCAAGA AGGCTGCAAGGTCCAGCAATGGAGGAGAACAAGTTCCATTTCACAGAGAGATCAAGGAAGAGGTCTCTAAGTTGGTTCAAAAGCTCGGTCAGGGACACAC CAAGCAGCCAAATGGTGACCAGCCCGTTAGCATGGTCACTCTGGCTGGCGAAAACAGGGGAGCCACAATGCATTTCGAAGGTGAGCCAGAGAGGAAAGAC GGATCCTTGCATATTCATCGCGGATACAAGACAAATCCAGATGACAGCATTGAAGAAGGAATCAAGAAGGGAAAGAGATCAAAACACACGACAACAAACA ACGATGATCAGCAACCAACAATGGCTTACGTTAACAGCAACAGTCAGAGTATCAACAACTCAATCCTGCTTGACAGTAAGGTGAATGAAAGAAATCCAGG AGTTCACTTGTTTCTGCCTCATAATATTCACCCAGATTCCAATGGATCAGCAGCCAATGAAGAGAATAATACACACAGATCAGAGGTAAGTGTCACCCCA GCTGAGAAGCTTACTTATGAGCCTCGACTGAGGAGGAGATGCTTAAGAGGACTGTTACTGGAAACAAGTGATTCAGATCCTGACAATCCTGATAAACCTC GGAGACATGGTTGCCGCTACTATGCTTGCGCGAAAACCAACAAAGACAAAGACATTGGTGTTCTTTAG
AA sequence Show only first row Show all	>Lus10033210 pacid=23178069 polypeptide=Lus10033210 locus=Lus10033210.g ID=Lus10033210.BGIv1.0 annot-version=v1.0 MAEQRQFRFRLPWLSSVTAPPRPTPETEPTRPPPTEIRAPPQPTSTISSQRPPFRPAGIAPPPPPPPPPPQAPASPVRTRRTTSVPPSPTRTMSRSLLSE GAPIAQSASPTLPSPELKLTEDIPTSKAEHQRLGSGESDPKISKAATTEEMNEPEAETKRDENTKREGNTNLSSSEGTLRKRVAELLSSATQTRESVSMA SLFGADRKKSMTSTGSVDAKIKGVSSTSHTRTKKAARSSNGGEQVPFHREIKEEVSKLVQKLGQGHTKQPNGDQPVSMVTLAGENRGATMHFEGEPERKD GSLHIHRGYKTNPDDSIEEGIKKGKRSKHTTTNNDDQQPTMAYVNSNSQSINNSILLDSKVNERNPGVHLFLPHNIHPDSNGSAANEENNTHRSEVSVTP AEKLTYEPRLRRRCLRGLLLETSDSDPDNPDKPRRHGCRYYACAKTNKDKDIGVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75260			oxidoreductases, acting on NAD...		Lus10033210 [exp]	0	1
AT1G75260			oxidoreductases, acting on NAD...		Lus10010832 [exp]	1.0	0.9800
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	2.0	0.9703
AT5G18970			AWPM-19-like family protein (....		Lus10001116 [exp]	2.2	0.9650
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	2.4	0.9692
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	3.7	0.9588
AT1G23530			unknown protein		Lus10030608 [exp]	4.0	0.9662
					Lus10016944 [exp]	5.5	0.9608
					Lus10014171 [exp]	5.9	0.9366
AT5G24620			Pathogenesis-related thaumatin...		Lus10015591 [exp]	6.7	0.9567
AT1G63310			unknown protein		Lus10008287 [exp]	6.9	0.9578

Compare expression of checked genes

Lus10033210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.