Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033211 pacid=23178043 polypeptide=Lus10033211 locus=Lus10033211.g ID=Lus10033211.BGIv1.0 annot-version=v1.0 ATGCCTGGCCGTCGTTCAATTTTCATTGCAGCAACCGTGTGCGCAAGAAGAGTTGAGTCCCCAACTTGGTTGCAACTTGCAACAGGAGATCCCTATTTAT CTATGGCAGATCCTTGGTTTGGCTCTTCCAATCTCATAAACTGCCTTCTCCCCTTTAGGAAAGGTTCTCAGTTGCCAAATTTGAGATTGGCAAGTAGTTC AACTCCTATTTCAGGGTCGAAATGGCTGAAGAGTGATGACGCCGTCCCTACTGAAGCCCACAGAGGTCTACAAAAAAGGGAAGGCCCATCGTCAAATCGG ATCATGAAGGATGTTCCTCTGGAACTTTCGGAGCTGTTGGAGAGAAGCGGAGTGTGA
AA sequence Show only first row Show all	>Lus10033211 pacid=23178043 polypeptide=Lus10033211 locus=Lus10033211.g ID=Lus10033211.BGIv1.0 annot-version=v1.0 MPGRRSIFIAATVCARRVESPTWLQLATGDPYLSMADPWFGSSNLINCLLPFRKGSQLPNLRLASSSTPISGSKWLKSDDAVPTEAHRGLQKREGPSSNR IMKDVPLELSELLERSGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10033211 [exp]	0	1
					Lus10016821 [exp]	2.8	0.8652
					Lus10038080 [exp]	6.6	0.8673
AT1G54860			Glycoprotein membrane precurso...		Lus10004470 [exp]	8.7	0.8469
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033516 [exp]	9.8	0.8326
AT5G04885			Glycosyl hydrolase family prot...		Lus10019385 [exp]	12.0	0.8552
					Lus10036407 [exp]	16.1	0.7852
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10003697 [exp]	16.7	0.8483
AT3G29000			Calcium-binding EF-hand family...		Lus10019090 [exp]	17.5	0.8210
					Lus10027005 [exp]	17.8	0.8459
AT2G14560		LURP1	LATE UPREGULATED IN RESPONSE T...		Lus10009095 [exp]	18.0	0.8222

Compare expression of checked genes

Lus10033211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.