Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75250 107 / 4e-31 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) AT1G19510 98 / 2e-27 MYB RSM4, ATRL5 RADIALIS-LIKE SANT/MYB 4, RAD-like 5 (.1) AT4G39250 97 / 5e-27 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) AT2G21650 95 / 3e-26 MYB RSM1, ATRL2, MEE3 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) AT2G18328 82 / 2e-21 MYB ATRL4 RAD-like 4 (.1) AT4G36570 77 / 8e-20 MYB ATRL3 RAD-like 3 (.1) AT5G05790 78 / 4e-18 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G58900 76 / 3e-17 MYB Homeodomain-like transcriptional regulator (.1) AT2G38090 72 / 1e-15 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT3G11280 67 / 5e-14 MYB Duplicated homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010831 [exp] 186 / 3e-62 AT1G75250 108 / 6e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10007152 [exp] 156 / 1e-50 AT1G75250 113 / 3e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10002538 [exp] 155 / 4e-50 AT1G75250 112 / 1e-33 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10023568 [exp] 111 / 8e-33 AT4G39250 123 / 5e-38 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Lus10026009 [exp] 110 / 2e-32 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10040453 [exp] 110 / 4e-32 AT2G21650 115 / 4e-35 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) Lus10014301 [exp] 109 / 5e-32 AT1G75250 102 / 5e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10041752 [exp] 105 / 1e-30 AT1G75250 103 / 2e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10040450 [exp] 101 / 7e-29 AT1G75250 98 / 5e-28 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G035000 [exp] 132 / 8e-41 AT1G75250 122 / 5e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.005G228000 [exp] 115 / 1e-34 AT1G75250 115 / 5e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G117200 [exp] 114 / 5e-34 AT4G39250 109 / 1e-32 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.004G155866 [exp] 114 / 5e-34 AT1G75250 113 / 5e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.005G122200 [exp] 109 / 3e-32 AT4G39250 112 / 3e-34 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.004G155400 [exp] 108 / 1e-31 AT1G75250 124 / 4e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G116600 [exp] 106 / 6e-31 AT4G39250 120 / 4e-37 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.007G023800 [exp] 105 / 1e-30 AT1G75250 116 / 2e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.002G260000 [exp] 97 / 5e-27 AT1G75250 108 / 3e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.007G025200 [exp] 88 / 2e-23 AT4G39250 99 / 1e-28 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033212 pacid=23178041 polypeptide=Lus10033212 locus=Lus10033212.g ID=Lus10033212.BGIv1.0 annot-version=v1.0 ATGACATCAAATTACCTCCCTTCTCATGGCTCTAGCTCCTCATGGACAGCCAAGCAAAACAAGCTGTTTGAGAGGGCGCTCGCAGTGTACGACAAGGACA CCCCTGACCGTTGGCAAAATGTGGCCAGAGCTGTTGGTGGTGGTAAATCTGCTGACGAAGTAAAAAGACACTATGATCGTCTCGTCGTGGATCTAATGTA TATAGAATCAGGTGAAGCTCCACTTCCAAATTACAGGAACCCTGTCAACAATGGTTTTGCTGAAGAACAAAGCGCTTTCGAGGAAACCTGCAGATCGCAA TTGGAAATGGAGACGTGGAACGTACCTTCAGGAATCTGGCGGAACGCGTTGATCGAGCTACTTGGGCAGCTGTGGCCACCGCCATTGCTGGTGGAGAGAG CGGTGTTGGAACGCAAATAA
AA sequence Show only first row Show all	>Lus10033212 pacid=23178041 polypeptide=Lus10033212 locus=Lus10033212.g ID=Lus10033212.BGIv1.0 annot-version=v1.0 MTSNYLPSHGSSSSWTAKQNKLFERALAVYDKDTPDRWQNVARAVGGGKSADEVKRHYDRLVVDLMYIESGEAPLPNYRNPVNNGFAEEQSAFEETCRSQ LEMETWNVPSGIWRNALIELLGQLWPPPLLVERAVLERK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10033212 [exp]	0	1
					Lus10002859 [exp]	2.2	0.9682
					Lus10003893 [exp]	2.4	0.9658
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	4.0	0.9640
					Lus10035062 [exp]	4.9	0.9652
AT2G17380		AP19	associated protein 19 (.1)		Lus10042352 [exp]	5.9	0.9192
					Lus10032767 [exp]	7.4	0.9535
					Lus10008289 [exp]	7.5	0.9551
					Lus10019472 [exp]	9.0	0.9550
AT2G24960			unknown protein		Lus10042421 [exp]	9.5	0.9571
					Lus10010828 [exp]	9.6	0.9111

Compare expression of checked genes

Lus10033212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.