Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09640 592 / 0 Translation elongation factor EF1B, gamma chain (.1.2) AT1G57720 582 / 0 Translation elongation factor EF1B, gamma chain (.1.2) AT5G17220 52 / 4e-07 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT3G62760 49 / 3e-06 ATGSTF13 Glutathione S-transferase family protein (.1) AT2G30870 47 / 2e-05 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT1G77290 44 / 0.0002 Glutathione S-transferase family protein (.1.2) AT1G49860 42 / 0.0009 ATGSTF14 glutathione S-transferase (class phi) 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002537 [exp] 687 / 0 AT1G09640 634 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10002536 [exp] 680 / 0 AT1G09640 630 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10007150 [exp] 678 / 0 AT1G09640 625 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10007148 [exp] 678 / 0 AT1G09640 638 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10039384 [exp] 111 / 7e-29 ND / Lus10020135 [exp] 72 / 7e-14 ND / Lus10022598 [exp] 60 / 2e-10 ND 36 / 0.006 Lus10042876 [exp] 64 / 4e-10 AT1G02080 1161 / 0.0 transcription regulators (.1.2) Lus10035139 [exp] 59 / 6e-10 AT2G16676 41 / 1e-04 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G226300 [exp] 639 / 0 AT1G57720 323 / 3e-107 Translation elongation factor EF1B, gamma chain (.1.2) Potri.019G077000 [exp] 635 / 0 AT1G57720 303 / 1e-99 Translation elongation factor EF1B, gamma chain (.1.2) Potri.003G004700 [exp] 628 / 0 AT1G57720 596 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Potri.013G103100 [exp] 134 / 2e-37 AT1G09640 115 / 2e-32 Translation elongation factor EF1B, gamma chain (.1.2) Potri.017G138800 [exp] 54 / 5e-08 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G015100 [exp] 54 / 6e-08 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G015200 [exp] 47 / 2e-05 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00647 [flax] [poplar] EF1G Elongation factor 1 gamma, conserved domain CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10033213 pacid=23178049 polypeptide=Lus10033213 locus=Lus10033213.g ID=Lus10033213.BGIv1.0 annot-version=v1.0 ATGCCGGCAAGGTGTTCTAGCTTCCGTAAACGAATTGAGCTGTTCACATGGCTTAAATTCAGAGTTCATAGAATCGTAGAGTTCAACTTCTCTACTACTG CAGTTGCGGTTGCCGGCGACCACGCGACGATGCGTTTGTTAACCCGGTTCTTCTACACGTGCCCCAAACCGGCTCGCCTTCTCCAGGCGTCTCTTTCCCA GAAATTCAATCTGCAATGGAAGTTGCCGGTGATTGAAGTGGGCTTCGACCTCCATCAAATTTTCTTCGCTGATAAGGAGACGATGCAAAAGGTACTTCAA TGCCGACCCTTGTCTCTCGTTGGTCTCCTAGTCAGTGTTACGCATTGGAAGGCTTCGTCCCCAGATATGTTCCATACTTTAGGGTACATGAAGCTTTGGG TACGTCTTGAGTGGGTGCCAGATCACTTGCGCACGCCAACTTTTGCCTCCGGGCTCTTGGGTATGATTGGGGAGGTATTGCATGCTGGGAAGACAAACAA GAATGCCTACAAGACATTGATTGTTGCAGAGTATTCTGGGCTGAAAGTTGATTTGGTTGAGAATTTTGAGATGGGAGTCTCAAATAAGACCCCTGAGTTT CTGAAGATGAATCCGATTGGCAAGGTTCCAGTATTGGAGACTCCTGATGGTCCTATATTTGAAAGCAATGCAATAGCTCGATATGGTAAGATCTACCCAT TAGGATTCATTTGCATAGAAGACTTTGGAGAAGTTTCTTATTTTTCATCTGTTTCTGCAGTAACGAAGTTGAAGGCAGACAACCCTCTCTTTGGAAGTTC TCTTATTGATTATGTAATGGCCATATGGATATATTTTGTCTTGAAATCTCCAGCCCATATTGAGCAATGGATTGACTTTGCATCGTTGGAGATTGATGCC AACCTTCGGAATTGGTTGTTGCCTAGGTTTGGGCGTGCTCCATACCTCCCCGCTGCTGAAGAAGCTACTGTCGCAGCACTGAAGAGGGCTCTTGATGCAT TGAACAATTACCTTACCACAAGCACCTTCTTGGTTGGGGATTCTGTTACCTTGGCTGACATCATCCTCACTTGCAATCTCTACTTGGGATTCAGTAGGAT CATGACTAAGAGCTTCACCTCAGCATTCCCTCATGTTGAAAGATACTTCTGGACCTTGGTTAATCAACCAAACTTCAAGAAGGTACTGGGGGATGTGAAG CAAACTGACACAATTCCTCCAGTTGAGTCTGGAAAGAAGCCAGTGCAGGGAAAGGAAAAGGCGAAGCCTAAGGAGGAGCCTAAGAAGGAAGCCAAAAAGG AAAAGGAGTCTGCAAAGCCCAAGGGTGAAGCTGCTGATGATGAGGAAGAGGCGGTACCAAAGCCAAAAGCGAAGAACCCTCTTGATTTACTGCCACCAAG TAAGATGATTCTGGATGAGTGGAAGAGGTTGTATTCCAACACCAAGACCAACTTCCGTGAGGTGGCAATCAAAGGTTTCTGGGACATGTATGATCCTGAA GGCTATTCATTGTGGTTCTGTGACTACAAGTACAATGACGAGAACACGGTCTCTTTCGTGACTCTGAACAAAGTGGGTGGGTTTCTCCAGAGGATGGATC TGGCTCGCAAGTATGCGTTCGGAAAGATGCTGGTGATTGGCTCTGAACCACCATTCAAGGTTAAGGGTTTGTGGCTTTTCCGAGGGCAAGAGGTGCCTCA GTTTGTTATAGATGAGTGCTATGACATGGAGCTCTATGAGTGGAAGAAAGTTGACATCTCCGATGAAGCCCAGAAGGAGCGTGTCAGCCAGATGATTGAA GACCAAGAACCTTTCGAGGGAGAGGCTCTGCTCGATGCCAAATGTTTCAAATAG
AA sequence Show only first row Show all	>Lus10033213 pacid=23178049 polypeptide=Lus10033213 locus=Lus10033213.g ID=Lus10033213.BGIv1.0 annot-version=v1.0 MPARCSSFRKRIELFTWLKFRVHRIVEFNFSTTAVAVAGDHATMRLLTRFFYTCPKPARLLQASLSQKFNLQWKLPVIEVGFDLHQIFFADKETMQKVLQ CRPLSLVGLLVSVTHWKASSPDMFHTLGYMKLWVRLEWVPDHLRTPTFASGLLGMIGEVLHAGKTNKNAYKTLIVAEYSGLKVDLVENFEMGVSNKTPEF LKMNPIGKVPVLETPDGPIFESNAIARYGKIYPLGFICIEDFGEVSYFSSVSAVTKLKADNPLFGSSLIDYVMAIWIYFVLKSPAHIEQWIDFASLEIDA NLRNWLLPRFGRAPYLPAAEEATVAALKRALDALNNYLTTSTFLVGDSVTLADIILTCNLYLGFSRIMTKSFTSAFPHVERYFWTLVNQPNFKKVLGDVK QTDTIPPVESGKKPVQGKEKAKPKEEPKKEAKKEKESAKPKGEAADDEEEAVPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPE GYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEVPQFVIDECYDMELYEWKKVDISDEAQKERVSQMIE DQEPFEGEALLDAKCFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G57720			Translation elongation factor ...		Lus10033213 [exp]	0	1
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	1.4	0.8330
AT3G56570			SET domain-containing protein ...		Lus10026538 [exp]	2.6	0.7491
AT3G16780			Ribosomal protein L19e family ...		Lus10023387 [exp]	9.7	0.7947
AT2G40660			Nucleic acid-binding, OB-fold-...		Lus10034239 [exp]	9.8	0.7692
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10004414 [exp]	9.8	0.7331
AT3G16780			Ribosomal protein L19e family ...		Lus10023388 [exp]	11.5	0.7663
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010211 [exp]	12.5	0.7516
AT4G28450			nucleotide binding;protein bin...		Lus10037378 [exp]	13.9	0.7460
AT4G25740			RNA binding Plectin/S10 domain...		Lus10014966 [exp]	14.7	0.7025
AT2G46290			Transducin/WD40 repeat-like su...		Lus10010332 [exp]	16.9	0.7519

Compare expression of checked genes

Lus10033213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.