Plant FIBer expression Database

Lus10033214 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010825
[exp]
129 / 2e-35 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10033214 pacid=23178056 polypeptide=Lus10033214 locus=Lus10033214.g ID=Lus10033214.BGIv1.0 annot-version=v1.0
ATGACGACAATGACAGAAACGACATGTCGTCTGCTCCTTCTATCCCTCCCCTTACTTTTCCTAATATTATTCAACGCCGCCGCACCCGTCGCCGGCGAAG
GGTTCCTGGATCAAATCAATTCAGACTCTGTGTCGGAGCTGCTTTCAAGCGGCTCTCTCGATGATGCCAAGAAGGCCATGTCTCCCGATGTTCAGAGCGC
CGTCCAACAATTGGCAGCTTCCGCCAACGCTAAATCCGACGATGCTGAAGAGGCTCTTAACTCGTTGGCTGAGTCCCCCGCCGAGGGCCCCGGCCCCGCT
GCTGGTTCCCCGGCGTCCTCGGAAGAGGACTCGTCCTCTTGGAAGGATTGGCTTAAGGAAAAAATGCAGGGCATGGGCTACGGTGGGCCACCATCAGAAT
CGCCGGAAGCAGCGCCAGGACCGGCATGGGGACCGACAGCATCAGAGGAATTGGCACCGGAGTCATCGATGGAAGAAGCTCCGGCGCCAGCCCCGGTGGG
AACAGATACGGAGGCAGAAGGCCCGACAGCAGAAGGCCCGACAGCAGAAGGCCCGACAGCAGAAGGCCCGACAGCAGAAGGCCCGACAGCAGAAGGCCCG
ACAGCAGAAGGCCCGACAGCAGAAGGCCCGACAGCAGAAGGCCCGACAGCAGAAGGCCCGACAGCAGAAGGCCCGACAGCAGAAGGCCCGACAGCAGAAG
GCCCGACAGCAGAAGGCCCGACAGCAGAAGGCCCGACAGCAGAAGGCCCGACAGCAGAAGGCCCAACAGCAGAAGGCCCAACAGCAGCTGCTCCAACGCC
AGTATAA
AA sequence
>Lus10033214 pacid=23178056 polypeptide=Lus10033214 locus=Lus10033214.g ID=Lus10033214.BGIv1.0 annot-version=v1.0
MTTMTETTCRLLLLSLPLLFLILFNAAAPVAGEGFLDQINSDSVSELLSSGSLDDAKKAMSPDVQSAVQQLAASANAKSDDAEEALNSLAESPAEGPGPA
AGSPASSEEDSSSWKDWLKEKMQGMGYGGPPSESPEAAPGPAWGPTASEELAPESSMEEAPAPAPVGTDTEAEGPTAEGPTAEGPTAEGPTAEGPTAEGP
TAEGPTAEGPTAEGPTAEGPTAEGPTAEGPTAEGPTAEGPTAEGPTAEGPTAEGPTAEGPTAAAPTPV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G22142 Bifunctional inhibitor/lipid-t... Lus10033214
[exp]
0 1
AT4G32340 Tetratricopeptide repeat (TPR)... Lus10002013
[exp]
2.8 0.7736
AT5G23090 CCAAT NF-YB13 "nuclear factor Y, subunit B13... Lus10009614
[exp]
4.0 0.7852
AT1G28220 ATPUP3 purine permease 3 (.1) Lus10020950
[exp]
4.2 0.7583
AT5G06130 chaperone protein dnaJ-related... Lus10022688
[exp]
4.5 0.8127
AT3G17980 AtC2 Arabidopsis thaliana C2 domain... Lus10009684
[exp]
5.2 0.7822
AT4G38190 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE... Lus10013851
[exp]
6.9 0.7490
AT3G12660 FLA14 FASCICLIN-like arabinogalactan... Lus10041630
[exp]
12.4 0.7370
AT1G09157 Protein of unknown function (D... Lus10030466
[exp]
17.5 0.7512
AT5G38260 Protein kinase superfamily pro... Lus10027119
[exp]
19.7 0.7661
AT5G39030 Protein kinase superfamily pro... Lus10027116
[exp]
22.4 0.7581

Lus10033214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.