Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19480 348 / 5e-118 DNA glycosylase superfamily protein (.1.2) AT1G75230 345 / 1e-116 DNA glycosylase superfamily protein (.1.2) AT3G50880 252 / 1e-81 DNA glycosylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010824 [exp] 503 / 1e-178 AT1G19480 417 / 2e-145 DNA glycosylase superfamily protein (.1.2) Lus10041749 [exp] 253 / 1e-81 AT3G50880 308 / 3e-105 DNA glycosylase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G035300 [exp] 378 / 1e-129 AT1G19480 360 / 8e-123 DNA glycosylase superfamily protein (.1.2) Potri.005G227700 [exp] 371 / 2e-126 AT1G75230 385 / 3e-132 DNA glycosylase superfamily protein (.1.2) Potri.007G024200 [exp] 256 / 2e-83 AT3G50880 293 / 1e-99 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF00730 [flax] [poplar] HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence Show only first row Show all	>Lus10033215 pacid=23178100 polypeptide=Lus10033215 locus=Lus10033215.g ID=Lus10033215.BGIv1.0 annot-version=v1.0 ATGGGCGAACAAACCCAATCGCATCCACCGGACTCTCAATCTCAATCAAAAAATCAGCCTCAACTGGATTCTGCCTCTTCTCCTGCTCCCGACTCTGCTA CCACCCATACCTTCTCTTCTGTCGACACGGTGACTCTTCTACCTACTGACTTGACCCCCGCCGCTCCTCTTCAGACCACCGCCTCCCCTCCTGCCAAAAT TCCCTCTCGTCCCCGAAAAATTCGGAAGCTCTCCCCGGAGGCCGCTCCCGATGAGGCTACCGGCGCCACCGCGGCCGAAACACCTAAATCTGCCGTACCC GTCTCCACCGCCGCCTCCACGAAGTCGGCGAAATCCAAAGCATCATCGCAGCAGCGGGCTCCGGCTCCGCGGATAATCGCAAGGTCGTTGTCGTGTGAGG GGGAGGTGGAGACCGCAATTCGCCATCTTCGGGAATCGGATCCGATCTTGAGCTCCTTAATCGACCTCCACCCACCCCCGACCTTCGAAACATTCCAGAC GCCGTTCCTAGCCCTAACCCGTAGCATTCTCTATCAGCAGCTGGCATTCAAAGCTGGGACCTCGATCTACACAAGGTTCGTCTCTCTCTGCGGCGGCGAG GCCGGGGTGTTGCCGGAGGCGGTTCTGGGCCGAACCCCGCAGCAGCTCCGTCAAATTGGGGTCTCTGGGAGGAAAGCAAGCTACCTTCACGATCTCGCAA GGAAATATGAGAAGGGGATATTGTCGGATTCAGCGATCGTGAGCATGGACGACAAATCATTATTCACTATGCTTACAATGGTGAATGGGATTGGTTCGTG GTCTGTGCATATGTTCATGATCTTTTCGCTTCACAGGCCGGATGTGCTCCCGAGTAATGATGTTGGGGTGCGGAAAGGAGTTCAGCTTCTCTACAACTTG GATGACTTGCCTCGTCCGTCACAGATGGAACAGCTGTGCGAGAAATGGAGGCCCTATAGGTCTGTGGCTTCATGGTATCTCTGGAGATTTGTGGATGCAA AAGGAAATCCTTCCAGTGCGCCTGCTGTGCCAACTGGTGTTGGCTTGGAGCAGACTCATGAGGAGGTCCATAATCAGAATCAGCATCAGCCTCAACAGCA GCAACCTCAGCTTATTGACCCCATTAGCGTTTACAACCTAGGGCTTTCTTGTTCATTAATTGCTCTCATTGTTGGAGTACTCTTCCCCGCTATGAATGTT TTCTTGAGTTTTCTGCCTTCATTCGGTGCTAATTGA
AA sequence Show only first row Show all	>Lus10033215 pacid=23178100 polypeptide=Lus10033215 locus=Lus10033215.g ID=Lus10033215.BGIv1.0 annot-version=v1.0 MGEQTQSHPPDSQSQSKNQPQLDSASSPAPDSATTHTFSSVDTVTLLPTDLTPAAPLQTTASPPAKIPSRPRKIRKLSPEAAPDEATGATAAETPKSAVP VSTAASTKSAKSKASSQQRAPAPRIIARSLSCEGEVETAIRHLRESDPILSSLIDLHPPPTFETFQTPFLALTRSILYQQLAFKAGTSIYTRFVSLCGGE AGVLPEAVLGRTPQQLRQIGVSGRKASYLHDLARKYEKGILSDSAIVSMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPSNDVGVRKGVQLLYNL DDLPRPSQMEQLCEKWRPYRSVASWYLWRFVDAKGNPSSAPAVPTGVGLEQTHEEVHNQNQHQPQQQQPQLIDPISVYNLGLSCSLIALIVGVLFPAMNV FLSFLPSFGAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75230			DNA glycosylase superfamily pr...		Lus10033215 [exp]	0	1
AT1G11360			Adenine nucleotide alpha hydro...		Lus10037867 [exp]	1.0	0.9274
AT1G27190			Leucine-rich repeat protein ki...		Lus10030811 [exp]	2.0	0.9202
AT1G11360			Adenine nucleotide alpha hydro...		Lus10038561 [exp]	6.7	0.8926
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10013296 [exp]	6.9	0.9013
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	7.9	0.9054
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10019252 [exp]	8.0	0.8967
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	11.2	0.9001
AT4G25680			PPPDE putative thiol peptidase...		Lus10039275 [exp]	12.7	0.8675
AT5G57460			unknown protein		Lus10000167 [exp]	13.2	0.8982
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	13.6	0.8994

Compare expression of checked genes

Lus10033215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.