Plant FIBer expression Database

Lus10033216 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033204
[exp]
309 / 1e-104 AT2G25010 50 / 4e-07 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10004836
[exp]
304 / 7e-104 ND /
Lus10000607
[exp]
291 / 4e-98 AT2G25010 47 / 4e-06 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10000712
[exp]
275 / 5e-93 ND /
Lus10000467
[exp]
268 / 4e-90 ND 37 / 0.005
Lus10001476
[exp]
269 / 5e-90 ND /
Lus10001883
[exp]
256 / 3e-85 ND /
Lus10021615
[exp]
249 / 7e-83 ND 41 / 1e-04
Lus10007996
[exp]
241 / 2e-79 ND /
Poplar homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10536 PMD Plant mobile domain
Representative CDS sequence
>Lus10033216 pacid=23178091 polypeptide=Lus10033216 locus=Lus10033216.g ID=Lus10033216.BGIv1.0 annot-version=v1.0
ATGATGACTTGCCGCGGTTTATCGGTCGGTCTACTTTTGTCTCAAATAGGGAATTGTTGGAGGAGTTCGGCATCAAATAGGAACTTGTTAGAGGAGAAGT
TGAAGGGAAAGAAATCTAGACTAGGGATGATGGGCAGTCTAGTGCTCAGTTTCAGATTCCTGGTCCGATATGCTTGGACCCTGATCTGCAGTCTGCTGAG
AGGAAGGTTACCGTGGAGTAGATTTTTGCTAGCCAGGCTCCAAATTTTGCTGATGACATCCACACCATTCGGGATGACTCCGACGGCAACGATGAGCAAA
TCCCGTCAGATGGTGATGGCGATGATGATGAGGATTATGATGCCTCGTTTCACCCTTTCTTATTGGACAATGCACGCTCGCGGAAGAGAGCACCAGGGAG
AGTCGTGGATCTACGAGTACTTCCCTAGCTTGTGTTGTAAGCAGACCCCGACCCCACGTGCTAGTGGTGAGGCACTTGCTGGGAGGTGGGAGGGACCGAG
GATCGTTGAGAGAGCAGCTGATGAGGTTTTGAGGGTAGAGAGACGCAGNNNNGATTGTAGTCTAGAGCCACTACGATCCGTTCTGGATGGGATGACGCAT
GCCCACGTTGATTGGCTTCCATTCGGTCCATCTAACTTTGACGGTGAGGCTCGATGGTCCATGTACAGTGGGGGCATACATGCATTCGATTACGTGGAGC
CCCACGATCCTAGCCGTGTGTTGCGTCAATATGGCTACCGGCAAACGATCCCAGATTCGATTCTCACGCTTGAGTTAGCTTGTCGACCGCCAGATGGGAC
GCAGTACGTAGTCAGGCACTCCAGGTTTGACTACAGCCGGTTTGGGCATTTGTTGGCCCCGATGTACTTCAGCACGCCTAGTGTGCCCAGATCGCCTGAC
GGTAACGCATCCCCGGAGTACATGGCGTGGTACCTCTACCGTACACACCCACAGATCGTCCCCACCCGTGCACCTGATATGCCACACCCACCGATGGATA
TGCGATCTTTCTGCGCTGGGTTGGCCCCCTTGTATGGGTCAGGTGGTAGGGCCGAGTTCATTGACTTGGCGGGAGAGTACTACGACGTTGAGGGGATGCT
CGGGTTGTGGTCTCATTATGCTCCATAG
AA sequence
>Lus10033216 pacid=23178091 polypeptide=Lus10033216 locus=Lus10033216.g ID=Lus10033216.BGIv1.0 annot-version=v1.0
MMTCRGLSVGLLLSQIGNCWRSSASNRNLLEEKLKGKKSRLGMMGSLVLSFRFLVRYAWTLICSLLRGRLPWSRFLLARLQILLMTSTPFGMTPTATMSK
SRQMVMAMMMRIMMPRFTLSYWTMHARGREHQGESWIYEYFPSLCCKQTPTPRASGEALAGRWEGPRIVERAADEVLRVERRXXDCSLEPLRSVLDGMTH
AHVDWLPFGPSNFDGEARWSMYSGGIHAFDYVEPHDPSRVLRQYGYRQTIPDSILTLELACRPPDGTQYVVRHSRFDYSRFGHLLAPMYFSTPSVPRSPD
GNASPEYMAWYLYRTHPQIVPTRAPDMPHPPMDMRSFCAGLAPLYGSGGRAEFIDLAGEYYDVEGMLGLWSHYAP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G48120 hydrolases;protein serine/thre... Lus10033216
[exp]
0 1

Lus10033216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.