Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42000 271 / 7e-95 ORMDL family protein (.1.2) AT1G01230 252 / 3e-87 ORMDL family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023031 [exp] 319 / 5e-114 AT5G42000 270 / 1e-94 ORMDL family protein (.1.2) Lus10005980 [exp] 257 / 2e-89 AT1G01230 295 / 1e-104 ORMDL family protein (.1) Lus10030232 [exp] 243 / 1e-76 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10003209 [exp] 214 / 5e-73 AT5G42000 194 / 2e-65 ORMDL family protein (.1.2) Lus10017314 [exp] 212 / 1e-71 AT5G42000 197 / 3e-66 ORMDL family protein (.1.2) Lus10031614 [exp] 83 / 2e-21 AT2G40190 81 / 1e-20 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144600 [exp] 283 / 7e-100 AT5G42000 281 / 8e-99 ORMDL family protein (.1.2) Potri.001G086300 [exp] 277 / 2e-97 AT5G42000 273 / 1e-95 ORMDL family protein (.1.2) Potri.002G174400 [exp] 259 / 3e-90 AT1G01230 254 / 3e-88 ORMDL family protein (.1) Potri.014G101000 [exp] 258 / 1e-89 AT1G01230 285 / 3e-100 ORMDL family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04061 [flax] [poplar] ORMDL ORMDL family
Representative CDS sequence Show only first row Show all	>Lus10033219 pacid=23172084 polypeptide=Lus10033219 locus=Lus10033219.g ID=Lus10033219.BGIv1.0 annot-version=v1.0 ATGTACGTGAGAGCAGATCCTTCGACGGATGTGAATCGGAACACCGAATGGTTCACCTATCCAGGCGTCTGGACTACTTACATCGGCATCCTTTTCGCCT CCTGGTTCATGGTTATCTGCCTCCTGGGCTGCTCCCCCGGCACCGCTTGGACCGTCGTCCATCTCGCCCACTTCCTAATTACGTACCACTTCTTTCACTG GAAGAAGGGAACTCCATTTGCTGACGACCAAGGTATCTACAATGGGTTGACATGGTGGGAACAAATAGAGAACGGCAAGCAGCTAACACGTAATAGGAAG TTTCTCACTATTGTTCCAGTTGTGCTATATCTGATAGCCTCACACACCACAAACTACCAAAATCCAATGTTGTTCTTCAACACAATGGCCGTATTCGTGC TGGTAGTCGCAAAGTTCCCTCACATGCACAAAGTCCGGATTTTTGGTATCAATGCCGACTTCTGA
AA sequence Show only first row Show all	>Lus10033219 pacid=23172084 polypeptide=Lus10033219 locus=Lus10033219.g ID=Lus10033219.BGIv1.0 annot-version=v1.0 MYVRADPSTDVNRNTEWFTYPGVWTTYIGILFASWFMVICLLGCSPGTAWTVVHLAHFLITYHFFHWKKGTPFADDQGIYNGLTWWEQIENGKQLTRNRK FLTIVPVVLYLIASHTTNYQNPMLFFNTMAVFVLVVAKFPHMHKVRIFGINADF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42000			ORMDL family protein (.1.2)		Lus10033219 [exp]	0	1
					Lus10003603 [exp]	1.7	0.9260
AT1G31870			unknown protein		Lus10033140 [exp]	4.2	0.9006
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	5.0	0.8939
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10008963 [exp]	7.5	0.8868
AT1G32420			F-box and associated interacti...		Lus10016866 [exp]	11.8	0.8728
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10022336 [exp]	15.8	0.8693
AT5G57710			Double Clp-N motif-containing ...		Lus10023201 [exp]	22.9	0.8359
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10013686 [exp]	26.8	0.8729
AT1G72390			unknown protein		Lus10013170 [exp]	28.1	0.8961
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10009944 [exp]	30.6	0.8792

Compare expression of checked genes

Lus10033219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.