Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05675 313 / 8e-103 BTB/POZ domain-containing protein (.1.2) AT4G10800 249 / 4e-80 unknown protein AT1G63850 59 / 3e-09 BTB/POZ domain-containing protein (.1) AT3G50780 50 / 3e-06 unknown protein AT5G60050 47 / 3e-05 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023030 [exp] 758 / 0 AT3G05675 348 / 2e-116 BTB/POZ domain-containing protein (.1.2) Lus10021269 [exp] 261 / 8e-83 AT3G05675 439 / 4e-152 BTB/POZ domain-containing protein (.1.2) Lus10013580 [exp] 259 / 5e-82 AT3G05675 438 / 9e-152 BTB/POZ domain-containing protein (.1.2) Lus10022484 [exp] 59 / 4e-09 AT3G50780 602 / 0.0 unknown protein Lus10017511 [exp] 58 / 1e-08 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 54 / 2e-07 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 54 / 2e-07 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 50 / 3e-06 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 47 / 2e-05 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G086100 [exp] 530 / 0 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2) Potri.003G144700 [exp] 376 / 1e-129 AT4G10800 265 / 2e-88 unknown protein Potri.006G202900 [exp] 322 / 1e-106 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.003G131000 [exp] 61 / 7e-10 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G100900 [exp] 59 / 3e-09 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 53 / 3e-07 AT3G50780 654 / 0.0 unknown protein Potri.005G129700 [exp] 49 / 7e-06 AT3G50780 623 / 0.0 unknown protein Potri.016G069566 [exp] 43 / 3e-05 AT3G05675 86 / 5e-21 BTB/POZ domain-containing protein (.1.2) Potri.001G233900 [exp] 44 / 0.0002 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.004G154600 [exp] 43 / 0.0004 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10033220 pacid=23172132 polypeptide=Lus10033220 locus=Lus10033220.g ID=Lus10033220.BGIv1.0 annot-version=v1.0 ATGGACGAATCCGGAACACCAAAGGAGGATTTCGTTCTGGGAGATCGGAGCACTAGTGACATTGCGGTGCGATTGAAGAACTCCGAAGGAATCTCAGAAA CATTCCACTGCCATTCTTCCATTCTGGTGAAGAAGAGCAAGTTCTTTGAAGATTGGATCTTGAATCACAAACCCGGTACCTGTGTAGAGATTCAATGTTC CGCCACGAATTATGAACATCACGTTTCTCTTTTAACATTGCTATACATCGAACCGGACTCGCTCTTGCATTCCTTCGAGACTGTCAAATCCACACTTGGA GTTCTCGAGGTATCGGTTGCTCTCGGTTGTGAAGAGATGACAAATAACTGCATCCAGTACTTGGAAGCTGTTCCTTGGGAGGAACAAGAAGAAGAAGAAA TTGTACAAGTAGCTTCGAAACTCGGCCCTATAGCTATGCCTATAACAGCCAGAATAAAACCGGTCGATCTGAGCTCCACGAAGAGCGTTTTTCTCTCCGC CCTTCGCTTCGCCACATCTACCGGAGGGTCTTGTCCTCCTTTCGGTGGCGACGAACTCAGAACTTCTGCTCAAGAACAAGTGGAATACATGTTGGGAGAG GACGAAGATACCCCTCTAGTAAAAGCCGACGAAGAAGTGAAATCAGTTGTGAGATTAGGTCTTTCGCAGATCTTCTCTTCGTTACTGATGCAAATGTCTT CGTTGCTGTCGGAATCTGACATCTCATTAGAAATAAAAGAGATCGACTTGTTGCATATCGTGTCAGATCTCGCGTGGATGTGTAGTATACTTCCGAAGAT GGATCTAATGAAGGACTTTGTCGTGAAATGGACCGAAACATCTAACCGGGTTATTGAGATAATTGAGGACGAGAGGCTCGATTCGACGATGTGGGGTTTG AAACTGAAGTTGGTTGAAGTAACTGTTAAGGTATTGGAAGCTGTTGGCTATGGGAATGTGATCTTACCAGCACCGTCCCGGGGACAGTTGTTGAAGGCAT GGCTGCCTTACATCAGGAAACTGAAGCCTCTGTTAGACGCGAAAGGTGACCAAGACACGAGTTTTCCTCACAGGATGGACGAAGATCTGTGCCAAAACAT AGAAGGCGCGATCGTGTCGCTGATACTGGCATTGCCATCGAATGACCAGGCTGATATTCTTGCAGGCTGGATGCATTCAGACCAGGTTAAGTTCCCGGAC TTGAGCGAGGCTTTCGAGGTTTGGTGTTATAGAACCAAATCTGCTAAGCGAAGGCTGGTTGAAGGCATGGAAAGAGTTGGTAATGAGAATGTGAACGGTA ATGCCACCGTCTCTCTCTGA
AA sequence Show only first row Show all	>Lus10033220 pacid=23172132 polypeptide=Lus10033220 locus=Lus10033220.g ID=Lus10033220.BGIv1.0 annot-version=v1.0 MDESGTPKEDFVLGDRSTSDIAVRLKNSEGISETFHCHSSILVKKSKFFEDWILNHKPGTCVEIQCSATNYEHHVSLLTLLYIEPDSLLHSFETVKSTLG VLEVSVALGCEEMTNNCIQYLEAVPWEEQEEEEIVQVASKLGPIAMPITARIKPVDLSSTKSVFLSALRFATSTGGSCPPFGGDELRTSAQEQVEYMLGE DEDTPLVKADEEVKSVVRLGLSQIFSSLLMQMSSLLSESDISLEIKEIDLLHIVSDLAWMCSILPKMDLMKDFVVKWTETSNRVIEIIEDERLDSTMWGL KLKLVEVTVKVLEAVGYGNVILPAPSRGQLLKAWLPYIRKLKPLLDAKGDQDTSFPHRMDEDLCQNIEGAIVSLILALPSNDQADILAGWMHSDQVKFPD LSEAFEVWCYRTKSAKRRLVEGMERVGNENVNGNATVSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05675			BTB/POZ domain-containing prot...		Lus10033220 [exp]	0	1
AT2G22740		SDG23, SUVH6	SET DOMAIN PROTEIN 23, SU(VAR)...		Lus10011049 [exp]	1.0	0.9235
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	3.0	0.8874
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	3.2	0.8900
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008741 [exp]	3.7	0.8784
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10015531 [exp]	4.9	0.8859
AT4G02720			unknown protein		Lus10022052 [exp]	5.5	0.8803
AT2G40860			protein kinase family protein ...		Lus10002993 [exp]	6.0	0.8605
AT2G31820			Ankyrin repeat family protein ...		Lus10027075 [exp]	8.4	0.8553
AT1G23780			F-box family protein (.1)		Lus10033762 [exp]	8.8	0.8593
AT3G53000		ATPP2-A15	phloem protein 2-A15 (.1)		Lus10008642 [exp]	9.5	0.8469

Compare expression of checked genes

Lus10033220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.