Plant FIBer expression Database

Lus10033221 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32928 49 / 6e-09 unknown protein
AT1G32920 47 / 2e-08 unknown protein
AT5G54165 40 / 9e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001526
[exp]
147 / 6e-48 AT1G32920 50 / 1e-09 unknown protein
Lus10023231
[exp]
98 / 4e-28 AT5G54165 45 / 1e-07 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G449900
[exp]
61 / 1e-13 AT1G32928 64 / 7e-15 unknown protein
Potri.001G449800
[exp]
61 / 1e-13 AT1G32928 64 / 7e-15 unknown protein
Potri.001G450000
[exp]
60 / 4e-13 AT1G32928 64 / 6e-15 unknown protein
Potri.015G004800
[exp]
54 / 6e-11 AT5G54165 47 / 2e-08 unknown protein
Potri.011G151600
[exp]
53 / 1e-10 AT1G32928 57 / 2e-12 unknown protein
Potri.012G021602
[exp]
52 / 2e-10 AT5G54165 49 / 4e-09 unknown protein
PFAM info
Representative CDS sequence
>Lus10033221 pacid=23172201 polypeptide=Lus10033221 locus=Lus10033221.g ID=Lus10033221.BGIv1.0 annot-version=v1.0
ATGATGATGATGTCGATGTTCAGCCCGTTCGATATTCTGTCGGGAGAAATTTTCGGGCAGAAGACCAATAACTTGCCTTCCAGCGTTTCCGACGGCAATA
AGAAATCGCAGCCGGAGGCGGGAAAATTAGACGACAGAAGATCGTCGTCGGCGTCGCATGCGCCGGAAAAGAAGAAGCCGGAGCAAGGTGTTGGATCTGA
AGCGAGAGGGCAGCGGCGGATGGTGCCGAGGTTTGCAGTGGAGTTTGATGGGATTCACTGTTTCGAGACTGTTGTGGCTTCTTATTACTGA
AA sequence
>Lus10033221 pacid=23172201 polypeptide=Lus10033221 locus=Lus10033221.g ID=Lus10033221.BGIv1.0 annot-version=v1.0
MMMMSMFSPFDILSGEIFGQKTNNLPSSVSDGNKKSQPEAGKLDDRRSSSASHAPEKKKPEQGVGSEARGQRRMVPRFAVEFDGIHCFETVVASYY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G32928 unknown protein Lus10033221
[exp]
0 1
AT1G32920 unknown protein Lus10001526
[exp]
2.4 0.8950
AT5G54165 unknown protein Lus10023231
[exp]
3.0 0.9021
AT5G17680 disease resistance protein (TI... Lus10041060
[exp]
5.5 0.8715
AT1G80840 WRKY ATWRKY40, WRKY4... WRKY DNA-binding protein 40 (.... Lus10024074
[exp]
7.3 0.8927
AT5G48150 GRAS PAT1 phytochrome a signal transduct... Lus10036623
[exp]
8.0 0.8791
AT2G45760 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE... Lus10040924
[exp]
8.5 0.8447
AT1G19210 AP2_ERF Integrase-type DNA-binding sup... Lus10009798
[exp]
9.2 0.8740
AT1G29690 CAD1 constitutively activated cell ... Lus10002768
[exp]
11.0 0.8393
AT2G22760 bHLH bHLH019 basic helix-loop-helix (bHLH) ... Lus10006085
[exp]
15.2 0.8039
AT4G16600 Nucleotide-diphospho-sugar tra... Lus10004717
[exp]
17.0 0.8583

Lus10033221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.