Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27230 210 / 7e-59 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcription factor-related (.1.2) AT1G64625 207 / 8e-59 bHLH bHLH157 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) AT1G06150 179 / 1e-47 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G31280 179 / 2e-47 bHLH bHLH155 ,CPuORF7 conserved peptide upstream open reading frame 7 (.1.2.3.4) AT5G24352 64 / 9e-13 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT3G15240 67 / 1e-11 Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT5G53900 61 / 1e-09 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) AT1G60060 49 / 8e-06 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) AT2G46510 46 / 7e-05 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G09820 44 / 0.0004 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001527 [exp] 1331 / 0 AT1G64625 216 / 5e-62 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2), Serine/threonine-protein kinase WNK (With No Lysine)-related (.3) Lus10013348 [exp] 224 / 8e-63 AT2G27230 355 / 6e-112 LONESOME HIGHWAY, transcription factor-related (.1.2) Lus10000609 [exp] 185 / 1e-49 AT2G31280 483 / 2e-161 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10033880 [exp] 168 / 1e-43 AT2G31280 481 / 7e-160 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10010877 [exp] 126 / 6e-30 AT2G29150 191 / 2e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041936 [exp] 62 / 9e-10 AT5G53900 419 / 7e-146 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Lus10003569 [exp] 57 / 1e-09 AT2G31280 120 / 1e-32 conserved peptide upstream open reading frame 7 (.1.2.3.4) Lus10012986 [exp] 50 / 3e-06 AT1G60060 428 / 8e-150 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1) Lus10005549 [exp] 50 / 4e-06 AT5G53900 410 / 7e-142 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144900 [exp] 546 / 0 AT2G27230 233 / 2e-66 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G086000 [exp] 506 / 5e-169 AT2G27230 248 / 7e-72 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.001G216900 [exp] 226 / 6e-63 AT2G27230 363 / 3e-113 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.009G017700 [exp] 226 / 1e-62 AT2G27230 355 / 2e-110 LONESOME HIGHWAY, transcription factor-related (.1.2) Potri.005G222500 [exp] 194 / 7e-53 AT2G31280 568 / 0.0 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.002G040600 [exp] 184 / 2e-49 AT2G31280 437 / 7e-144 conserved peptide upstream open reading frame 7 (.1.2.3.4) Potri.006G090000 [exp] 184 / 4e-49 AT1G06150 195 / 6e-53 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G397800 [exp] 71 / 1e-12 AT5G53900 439 / 1e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.011G116400 [exp] 67 / 2e-11 AT5G53900 438 / 3e-153 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1), Serine/threonine-protein kinase WNK (With No Lysine)-related (.2) Potri.014G024000 [exp] 52 / 7e-07 AT1G60060 243 / 4e-77 Serine/threonine-protein kinase WNK (With No Lysine)-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10033222 pacid=23172079 polypeptide=Lus10033222 locus=Lus10033222.g ID=Lus10033222.BGIv1.0 annot-version=v1.0 ATGGGTAGTGGAAAGATGGAATCTTTTGCGAAGGAGAAGCTCAGGACCCTCTGTTGCAGCAATGACTGGTCTTTTGGAGTCCTCTGGCGCCTTGATCAGC GGAATTCCATGTTGCTGAGAGTTGAAGATGCCTATGTTGAAGAACAAATGCAGACAGTAGTTACAGATTTGCTTCTTCAGGTCCACATTCTTGGTGAAGG AATAATTGGTCAGACAGCTGTTAGTGGGAAGCACCAATGGATTTCTGCTGCCTCTGTTGAATGCCAAGACTTACTGCAGGCTGATTCTGAGATTAGCAGC TTGATTTCTTCTGCTATGAAGACCATTTGTATCATTCCATTGGAATCACAAGGGGTCATACAGCTTGGATCTATTCAGAAGATTCCGGAGAGGCTAGAGT TTGTGGAACAAGCAAAAAGGTTGTTCAGTGACATGGAAAGCGCTTGCAGTTTCGATCCGATGACAAGCAAGGCTTCATCATTGGCCTGCGATGCTTCTGA TCTAAATGACTGGTTTGCTTCCTTTTGTAATGGAAGCATTTCTCCCATCCGTGGTGAAAACTGCGATCAGCTAGTTGAATTCGGCTGTACTTCATCAAAC TCAGCATTACGTATAGAAGAAGCAAAGATTGTCCCTTCATTTGTAGACTCGGGCCGGGCATCTAGTCATTGGAGCAATGGAGGTTCCATTTTGACCTCAT TGGAGTCACATTTGGGTTCAGAAATGGAGGTCTGTGATCTTCCATGGAGTTACAATACAGGAGGGTTGGTTGAATTAGCTCAATCAATTCAAGAACATGC TGGAAGAAGATCTGGTGCCACTCAGGTTGATTCTTTGCAACAATCAGACAGTAGCAGTGTCACTGAGCTTAAGGAAACAGAAACCTTATGTGGCTTTTCT GCAGACATGTCCAAATTTTTCAAGGTTGATAATCCATTTGAGTTGATGTCAACAAATTCAGGACTTCATGGACCCCGTTCCGGTCTGCTTCAAGATGTTA TACTTGAAATTCCATTCAACCAACCAGCGAATATTTCGCAAAGCTGTGTTAGTAATGATGTAGCTCAAAACGATCTGTTTGAAGTCCTAGGACTCAGGTC TTCTGCAAATGAGATTACAAAGGTTGGCCCTCAAAAGGGGTTATTCTCTGAACTTGGACTTGAGGAGCTTCTTGGTGGCATTAGAAGTTCAAGGTGTGAT GCTAGATCAAGCATTATTGATGATGGGGCAGCATCACCTGCTAAGAGAATAAAAATGGAGAACTCATCCTACAGTGTTAACCAAGTTCATCACTTGGGGA ATGTCTCTTGTTCATCTAGCAGAACAAGCATGCCTGCTTCTAGTTTGGAGTACAAGGAGAAGAATCTTGTGTTTTCAAAGTCGCCAATGGCAATGTTGAT TGACGACAGCTACCACCGTAGCATCACATCCAAAGGAACTACTACTCCAGGAAAGGCTAGGAAGCCTGAGGATTCTGTTAAAGGGTCCAAGAAAAGGGCT CGCCCAGGTGAAAATTCTCGGCCAAGGCCAAAAGACCGTCAACAGTTCCAAGACCGTCTCAAAGAGTTGAAAGGAATAGTCCCCAATGCTCAAAAGGATA GCATTGATAATTTGTTGGCTAGAACAATCAAACACATGCGTTTCTTGCAGAGTGTGACAAAATATGCAGACCAGCTTAAACAAGCTGATCAGCCAACGAT AAGTGGCCAAGGGAATGGAAATGGTGGTGCTACTTGGGCATTGGAAGTTGGAGAGGAAACAGTGGTTTGTCCTGTTATGGTTAAAGACCTAGTTCCACCT GGTCTAATGCTTATTGAGATTCTGTGCAAGGACCAAGGATACTTTCTTGAGATAGCTGGTGCAGTAAGGGGTCTTGGGTTGAATGTACTTAAAGGAGTGA TGAAAGCTCAAGATGATAAGGTGTGGGCTCGATTCGTTGTCGAGGCGAGTTCATCTATGACAAGGACAGATGTACTTTGGTCCCTTGTCCCACTTTTACC CCAAGCAGCAGCCAATAGTGGGGTGGACCAGAACTTGTCAAGTAATGTTCATCATGTCTCCAGAAATTACCAGCAACCAGGACCAGCATGTCACATTGGC TTGGCTGAAGCTACTCAATGA
AA sequence Show only first row Show all	>Lus10033222 pacid=23172079 polypeptide=Lus10033222 locus=Lus10033222.g ID=Lus10033222.BGIv1.0 annot-version=v1.0 MGSGKMESFAKEKLRTLCCSNDWSFGVLWRLDQRNSMLLRVEDAYVEEQMQTVVTDLLLQVHILGEGIIGQTAVSGKHQWISAASVECQDLLQADSEISS LISSAMKTICIIPLESQGVIQLGSIQKIPERLEFVEQAKRLFSDMESACSFDPMTSKASSLACDASDLNDWFASFCNGSISPIRGENCDQLVEFGCTSSN SALRIEEAKIVPSFVDSGRASSHWSNGGSILTSLESHLGSEMEVCDLPWSYNTGGLVELAQSIQEHAGRRSGATQVDSLQQSDSSSVTELKETETLCGFS ADMSKFFKVDNPFELMSTNSGLHGPRSGLLQDVILEIPFNQPANISQSCVSNDVAQNDLFEVLGLRSSANEITKVGPQKGLFSELGLEELLGGIRSSRCD ARSSIIDDGAASPAKRIKMENSSYSVNQVHHLGNVSCSSSRTSMPASSLEYKEKNLVFSKSPMAMLIDDSYHRSITSKGTTTPGKARKPEDSVKGSKKRA RPGENSRPRPKDRQQFQDRLKELKGIVPNAQKDSIDNLLARTIKHMRFLQSVTKYADQLKQADQPTISGQGNGNGGATWALEVGEETVVCPVMVKDLVPP GLMLIEILCKDQGYFLEIAGAVRGLGLNVLKGVMKAQDDKVWARFVVEASSSMTRTDVLWSLVPLLPQAAANSGVDQNLSSNVHHVSRNYQQPGPACHIG LAEATQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64625	bHLH	bHLH157	Serine/threonine-protein kinas...		Lus10033222 [exp]	0	1
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10030539 [exp]	1.4	0.7719
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10006237 [exp]	29.5	0.7189
AT1G64625	bHLH	bHLH157	Serine/threonine-protein kinas...		Lus10001527 [exp]	34.7	0.6778
AT4G38050			Xanthine/uracil permease famil...		Lus10035946 [exp]	37.1	0.7178
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10011507 [exp]	41.0	0.7281
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10041419 [exp]	42.7	0.6745
AT4G16650			O-fucosyltransferase family pr...		Lus10028957 [exp]	63.4	0.6488
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10039398 [exp]	69.1	0.6695
AT5G50090			unknown protein		Lus10042139 [exp]	74.2	0.6332
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Lus10005584 [exp]	78.3	0.6676

Compare expression of checked genes

Lus10033222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.